Aminobacter niigataensis: AMD1_3190
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Entry
AMD1_3190 CDS
T09606
Name
(GenBank) Murein L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
anj
Aminobacter niigataensis
Brite
KEGG Orthology (KO) [BR:
anj00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
anj01002
]
AMD1_3190
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
anj01011
]
AMD1_3190
Peptidases and inhibitors [BR:
anj01002
]
Cysteine peptidases
Family C82
AMD1_3190
Peptidoglycan biosynthesis and degradation proteins [BR:
anj01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
AMD1_3190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
CAI2934464
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All DBs
Position
AMD1:3045629..3047497
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AA seq
622 aa
AA seq
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MTLSFLKKPISLPLAALAATLAMGAPQAGAQNFFDILFGGGNNRNYRQPQGEFPPPPRKA
PPKRAAPAKISAPSYYTYKIDQMVPVDFSKLVPTTQSVSLEPSLAGTAFREALAGLSDFN
LVAEKEIAKALLDYYSANPDFIWVTGQVANSRAEDAIRSLSDAAGHGLMPADYSVAVPQA
AFAADDTAGRLKTLIRFEMAMSVRALRYVHDAQGGRIDPNRISGYYDFAAKPLDMVGVLK
SLSQSQDARALLEGYHPKNPEYQALRVELEALRASEENDIVVDAKLLLKPGETSPELPKL
LHLIARDLDDEMGGEYGETLARLGASEIYVPELVPVIEAVQKRAGLKPDGVVGPRTVATL
AGTSKADRLDKVLVALEQLRWLPSDLGSPRVFINQPAYTASYIDGGVEKLKMKTVIGKTT
NQTSFFQDEIEQVDYNPYWGVPQSIIVNEMLPRLRNDPSYLDRAGYEVTDSRGKRIPSSA
IDWGQYGAKVPFSVRQAPSEANALGELKILFPNKHAIYMHDTPQKALFDRDSRAFSHGCI
RLSDPRGMAAAVLGTDVDHIAAKLKQGHSFEKVTRKIPVYVAYFTAWPDLDGKVEYFGDV
YDRDAKLKDAMSRTEAARAPSI
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgacgctttctttcctgaaaaagccgatctctcttcctcttgcggccttggcagcgacg
ctcgccatgggtgcgccgcaggccggtgcgcagaatttcttcgacatcctgtttggcggc
ggcaacaaccgtaactacaggcagccgcagggcgagttcccgccaccgccgcgcaaggcg
ccgccgaaacgggctgcgccggcaaagatcagcgcgccatcctattacacctacaagatc
gaccagatggtgcccgtcgatttctccaagctggtgccgaccacgcagtcggtgtcgctg
gagccctcgctcgccggcaccgcgtttcgcgaggcgcttgccggcctgagtgatttcaac
ctcgttgccgaaaaagagatcgccaaggcgctgctcgactactattcggccaatcccgat
ttcatctgggtcaccggccaggtagccaacagccgtgccgaagacgccatccgcagcttg
agcgatgcggcaggccacgggctgatgccggcggattattccgtcgctgtgccgcaagct
gccttcgcagctgatgacaccgccggtcggctgaagacgctgatccgattcgagatggcg
atgtcggtgcgcgcgctgcgctacgttcacgacgcgcagggcggccgcatcgacccgaac
cgcatctccggctactacgatttcgcggccaagccgctcgacatggtcggcgtgctgaag
agcctgagccagtcgcaggacgcgcgcgccctgctggagggctatcacccgaagaacccg
gaatatcaggcgctacgcgtcgaactggaagcacttcgcgcgagcgaggaaaacgacatc
gtcgtcgacgccaagctgctgctgaagccgggcgagacgagcccggaactgcccaagctg
ctgcatctgatcgcacgcgacctcgacgacgagatgggcggcgagtatggcgagacgctg
gcaaggctgggcgcgagcgagatctatgtgcctgagctggtgccggtgatcgaagccgtg
cagaagcgggcagggctgaaacccgatggcgtggtcggcccacgcacggtggcgaccctt
gccggcacgtccaaggccgacaggctggacaaggtgctggtggcgctcgaacagttgcgc
tggctgccttcagacctcggcagtccgcgggtgttcatcaaccagcccgcctataccgcc
agctacatcgacggcggtgtcgaaaagctcaagatgaagacggtgatcggcaagaccacc
aaccagaccagcttcttccaggatgagatcgaacaggtcgactacaatccctattggggc
gtgccgcagtcgatcatcgtcaacgagatgctgccgcgcctgcgcaacgatccgagctat
ctcgaccgtgccggctacgaggtcaccgattcgcgcggcaagcgcattccatcgtcggcg
atcgactggggccagtatggcgccaaggtgccgttcagcgtgcgccaggcgccgagtgag
gcgaatgcgcttggcgaactcaagatcctgttccccaacaagcatgcgatctacatgcac
gacacaccgcagaaggcgctgttcgaccgtgacagccgcgccttcagccacggctgcatc
cggctttcggatccgcgcggcatggcggcggcagtgctcggcaccgacgtcgatcatatc
gcggccaagctgaagcagggccattccttcgagaaggtgacgcgcaagatcccggtctat
gtcgcctatttcacggcctggccggacctcgacggcaaggtcgaatatttcggcgacgtc
tacgaccgcgatgccaagctcaaggacgcgatgagccggaccgaagcggcacgagcgccg
agcatctga
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