Aminobacter niigataensis: AMD1_3546
Help
Entry
AMD1_3546 CDS
T09606
Symbol
rpoC
Name
(GenBank) RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
anj
Aminobacter niigataensis
Pathway
anj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
anj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMD1_3546 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anj03021
]
AMD1_3546 (rpoC)
03400 DNA repair and recombination proteins [BR:
anj03400
]
AMD1_3546 (rpoC)
Enzymes [BR:
anj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMD1_3546 (rpoC)
Transcription machinery [BR:
anj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMD1_3546 (rpoC)
DNA repair and recombination proteins [BR:
anj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMD1_3546 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF6744
Phage_cement_4
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
CAI2934820
LinkDB
All DBs
Position
AMD1:complement(3400237..3404433)
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVMNLFNPQAPAQVFDSIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDSFTA
MIGAEAIHDLLASMDLEKIAGDLRSELATTTSELKQKKYLKRLKVVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPASGAPIIVPSQDMVLGLYYLSIVNQNEPGEGMAFADMGELQHALE
TKAVTLHAKIKGRFRTVDAEGNVVSKIHDTTPGRMIIGELLPKNVNVPYETANQEMTKKN
ISKMIDTVYRHCGQKETVIFCDRIMALGFAHACRAGISFGKDDMLIPDTKHGLVEQTEAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCSEKVADEMMARIKAVEFEDNGRQKPMNSIYM
MSHSGARGSPTQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMQPIVDAGQVVASLGLRILGRTS
LDDINHPVTGDLLVKGGTLMDERDIEVIEKAGVQSVRIRSALTCEVKVGVCAVCYGRDLA
RGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDSSFLEASYEGKVEIRNRNV
VRNSDGNLVVMGRNMAILILDEAGKERATHRVTYGSRIFVDDGDKVKRGQRVAEWDPYTR
PILTEIEGRVAFEDLVDGISVQETADESTGITKREVIDWRSTPRGNDLKPAMVVQDSKGK
VGKLSKGGDARFLLSVEAILSVEPGAQVRPGDVLARIPMESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTVRFGRDYKNKRRIIIEPHDSTLEPVEYLIPKGKPFHLQDGDAIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVEI
TVQGDSIYIPGDHVDVIEFDEVNDRLIEEGKKPAEGQPVLLGITKASLQTPSFISAASFQ
ETTRVLTEAAVAGKTDMLQGLKENVIVGRLIPAGTGGMMSQIRRIATSRDELILDERRKL
SGVEVAEPILTDMVNAAQ
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatctcttcaaccctcaggcgcctgcgcaggtgttcgattcc
atccggatttcgctcgccagccctgagaagattctgtcctggtcgttcggcgagatcaag
aagccggagacgatcaactatcgtaccttcaagccggagcgcgacggcctgttctgcgcg
cgcatcttcggcccgatcaaggactacgaatgcttgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgaaaagtgcggcgtggaagtcacgctgtcgcgcgttcgccgc
gagcgcatgggccacatcgagctcgcagcgcccgtcgcccacatctggttcctgaagtcg
ctgccgagccgcatcggcacgctgctcgacatgacgctcaaggatatcgagcgcgtcctg
tatttcgagaactacatcgttaccgagcctggcctgaccgcgctcaaggagcaccagctc
ctgagcgaggaagagtacatgcttgcggttgacgagtatggcgaggacagcttcaccgcc
atgatcggcgccgaggccatccacgacctgctcgccagcatggacctggagaagatcgcg
ggcgatctgcgttcggaactcgccacgacgacgtcggaactcaagcagaagaagtacctc
aagcgcctcaaggtcgttgagaacttcatggaatcaggcaaccgtcccgagtggatgatc
atgaaggtcgtgccggtgatcccgccggacctgcgcccgctggtcccgctggatggcggc
cgctttgcgacctccgacctgaacgatctctatcgccgcgtgatcaaccgcaacaaccgc
ttgaagcggctgatcgaactgcgtgcgcctggcatcatcatccgcaatgaaaagcgcatg
ctgcaggaggctgtcgacgcactgttcgacaacggccgccgcggtcgcgtcatcaccggt
gccaacaagcgcccgctgaagtcgctgtccgacatgctcaagggcaagcagggtcgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctacgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggtcgagaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctgctcaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgaa
cccactctgatcgaaggcaaggccatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggcgaccagatggctgtccacgttccgctgtcgctcgaggctcagctc
gaagcacgcgtgctgatgatgtcgaccaacaacatcctgcacccggcttccggcgcgccg
atcatcgtgccgtcgcaggacatggttctcggtctctactacctctcgatcgtcaaccag
aacgagccgggcgagggcatggcgtttgccgacatgggcgaactccagcacgcgcttgag
accaaggcagtcacccttcacgccaagatcaaggggcgcttccgcactgtcgacgccgaa
ggcaatgtcgtgtccaagatccacgacacgaccccgggccgcatgatcatcggcgaactt
ctgccgaagaacgtcaacgtgccgtacgagaccgcaaaccaggagatgaccaagaagaac
atctccaagatgatcgataccgtctaccgccactgcggtcagaaagagacggtcatcttc
tgcgatcgcatcatggctctcggtttcgctcacgcctgccgcgccggcatctcgttcggc
aaggacgacatgctcatccctgatacgaagcacggcctggtcgaacagaccgaagcgctc
gccaaggaatatgagcagcagtacaacgacggcctgatcactcagggcgagaagtacaac
aaggtcgtcgacgcctgggccaagtgctcggaaaaggtcgccgacgaaatgatggcccgc
atcaaggcggtggagttcgaggacaacggccgtcagaagccgatgaactcgatctacatg
atgtcgcactccggtgcgcgtggttcgcccacccagatgcgtcagctcgccggcatgcgc
ggcctgatggccaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgaccgttcttgaatacttcaactcgacccacggcgcccgcaagggtctcgcg
gataccgctctgaagacggctaactccggctacctgacccgtcgtctcgtcgacgtggcg
caggactgcatcgtcaactcggttgattgcggcaccgacaagggcctcaccatgcagccg
atcgtcgatgccggccaggtggtcgcttcgctcggtctgcgtatcctcggccgtacttcg
ctcgacgacatcaaccacccggtcaccggcgatctgctggtcaagggcggcacgctgatg
gacgagcgcgacatcgaggtgatcgagaaggctggcgtgcagtcggtccgcatccgttcg
gcactgacctgcgaagtcaaggtcggcgtctgcgcggtctgctacggtcgcgacctggca
cgcggtacccctgtcaaccagggtgaagctgtcggtgtcatcgccgcacagtcgatcggc
gagcctggcacgcagctcaccatgcgtaccttccacatgggcggtaccgcgcaggtggtc
gacagctcgttcctcgaagcttcgtatgaaggcaaggtcgagatccgcaaccgcaacgtc
gtccgcaactccgatggcaacctcgtggtcatgggccgcaacatggcgatcctgatcctc
gatgaagccggcaaggagcgtgcgacgcaccgtgtcacctatggttcgcgtatcttcgtg
gacgatggcgacaaggtgaagcgcggccagcgtgttgcagagtgggatccctacacccgt
ccgatcctcaccgaaatcgaaggccgcgtggccttcgaggatctggtcgacggcatttcc
gttcaggaaacggccgacgagtcgaccggcatcaccaagcgtgaggtcatcgattggcgt
tcgaccccgcgcggcaacgatctgaagcccgcgatggtcgttcaggactccaagggcaag
gtcggcaagctgtcgaagggcggcgacgcccgcttcctgctctcggtcgaggccattctt
tcggtcgagccgggtgcgcaggttcgccctggcgacgtgctggcgcgtatcccgatggaa
agcgcgaagaccaaggacatcaccggcggtctgccgcgtgttgccgaactcttcgaagcc
cgccgtccgaaggatcacgccatcatcgccgagatcgatggtacggtccgcttcggccgc
gactacaagaacaagcgccgcatcatcatcgagccgcatgactcgacgcttgagccggtc
gaatacctgatcccgaagggcaagccgttccatctccaggacggcgacgcgatcgagaag
ggcgactacatcctcgacggcaatccggcgccgcacgacatcctggcgatcaagggcgtg
gaagcgcttgcttcctacctcgtcaacgaaatccaggaagtctaccggttgcagggcgtg
tcgatcaacgacaagcacatcgaggtcatcgtccgtcagatgctgcagaaggtcgagatc
accgtacagggcgactcgatctacatcccgggcgatcatgtcgacgtcatcgagttcgac
gaggtcaacgatcgcctgatcgaggagggcaagaagcctgccgaaggtcagccggttctg
ctcggtatcaccaaggcatcgctgcagacgccgtccttcatctcggccgcctccttccag
gagacgaccagggtgctgacggaagctgcggtcgccggcaagaccgacatgctgcagggt
ctcaaggaaaacgtcatcgtcggccgtctcatcccggccggcacgggcggcatgatgagc
cagatccggcgcattgccacctcgcgcgacgaactgatcctcgacgagcgccgcaagctt
tcgggcgtggaagtcgccgagccgatcctgaccgacatggtcaacgccgctcagtaa
DBGET
integrated database retrieval system
