Aminobacter niigataensis: AMD1_3639
Help
Entry
AMD1_3639 CDS
T09606
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
anj
Aminobacter niigataensis
Pathway
anj03410
Base excision repair
anj03430
Mismatch repair
anj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
anj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AMD1_3639
03430 Mismatch repair
AMD1_3639
03440 Homologous recombination
AMD1_3639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anj03400
]
AMD1_3639
DNA repair and recombination proteins [BR:
anj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AMD1_3639
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AMD1_3639
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMD1_3639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CAI2934913
LinkDB
All DBs
Position
AMD1:complement(3503858..3505648)
Genome browser
AA seq
596 aa
AA seq
DB search
MATEKRNFLGVRRSATGVSWEHRLTERQDMLALAIAQGHGVPDIVARVLAGRGVLPEDAE
RFLDPTIRDLLPDPATLTDMNKAAGRIADAVLRGERVAIFGDYDVDGACSSALMKRFLGH
FGVEAEIYIPDRIFEGYGPNPDAMRELIGRGAGLIVTVDCGTNSAASIDAANEAGADVVV
LDHHQVGGALPNAVAVVNPNRDDDLSGQGHLCAAGVTFLTLVQTAKVLRERLPDAPRPDL
LKLLDLVALATVADVVPLTGVNRAFVVKGLQAMRQQNNPGLTALARVARIGEPLNTFHLS
FLLGPRINAGGRIGDAALGSKLLATDDPVEAGTIAETLDRLNQERQAMETVMLAEARAEA
DAEIGAGPGPAVLVTANSTWHPGIVGLLASRLKDHARRPAFAIAFNGNGVGTGSGRSVSG
FDLGRLVREAVEAGLLVKGGGHAMAAGITVERAKLGEVRAFFEARAAADVFRLQDEESLL
VDGALAAEGATLALVESLEKAGPFGQGHVAPTFVLPRHKLADVRVIGTGHVRIDLRSESG
GRIQGISFRSAEAPLGEFLLRNSGRTVHVAGSLSVNHWNGNRTVQLRVIDASLAGP
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgaaaagcgcaatttcctcggcgtacggcgttcggccaccggtgtttcatgg
gagcaccggctgaccgaacgccaggatatgctggcgcttgccatcgcacagggccatggt
gtgcccgacatcgtcgctcgcgtgctggccgggcgcggtgtgctgccggaggatgcggaa
cgcttcctcgaccccaccatccgcgacctgttgccggatccggcgacgctaaccgacatg
aacaaggccgccggccgcattgccgatgcggtgctgcggggcgagcgcgtcgccatcttc
ggcgactatgatgtcgatggcgcctgctcgtcggcgctgatgaaacgttttctcggccac
ttcggcgtcgaggccgaaatctacattcccgacaggatctttgaaggctacggccccaac
cctgatgcgatgcgcgagttgatcggccgtggcgctggcctgatcgtcacggtggactgc
ggcaccaacagcgcggcatcgatcgacgcggccaacgaggccggtgccgatgtcgtcgtg
ctcgaccaccatcaggtcggcggtgcgttgccgaacgcggttgccgtggtcaatccgaac
cgcgacgacgatctttccggccagggccatctctgcgccgccggcgtcaccttcctgacg
ctggtgcagaccgccaaggtgctgcgcgaacggctgcctgacgcgccgcggcccgatctt
ctcaagctgctcgacctcgtggctctcgcgaccgtggccgacgtggtgccgctgaccggc
gtcaacagggcgttcgtcgtcaagggcctgcaggcgatgcgccagcagaacaatcccggt
ctcaccgcgctcgcccgcgtcgcccgcatcggcgagccgctcaacaccttccacctgtcg
ttcctgctcggtccgcgcatcaatgccggtgggcgcatcggcgacgcggcgctcggcagc
aagctgctggcgaccgacgatccggtcgaggcaggcacgatcgccgaaacgctcgatcgc
ctgaaccaggagcggcaggcgatggagacggtaatgctggccgaggcgcgcgccgaggcc
gatgcggagatcggtgccgggcctggaccagcggtgctggtgacggccaacagcacctgg
catcccggcattgtcgggttgctggcgtcgcggctcaaggaccatgcccgtcgcccggct
ttcgccatcgccttcaacggcaatggtgtcggcaccggctcagggcggtccgtctcgggc
ttcgatctcggtcgtctggttcgggaggccgtcgaggctgggctgctggtcaagggtggc
ggtcatgccatggcggccggcatcaccgtcgagcgcgccaagctcggtgaggtgcgcgcc
ttcttcgaggcacgcgcggccgcagacgtgttccgcctgcaggacgaggaaagcctgctt
gtcgacggcgcgctcgccgccgaaggtgcgacgctggcactcgtcgagtcattggagaag
gcgggtccgttcggacagggccacgtagccccaaccttcgtcctgccgaggcacaagctg
gccgatgtcagggtgatcggcacaggccacgtgcgcatcgacctcaggtctgaaagtggc
ggccgcatccagggcatctcgttccggtccgccgaagcgccgctcggcgagttcctgctg
aggaacagcgggcgcacggtccatgtcgccgggtcgctgtcggtcaatcactggaatggc
aaccgcacggtccaactgcgcgtcatcgacgcgtcgcttgccgggccttag
DBGET
integrated database retrieval system
