Aminobacter niigataensis: AMD1_4618
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Entry
AMD1_4618 CDS
T09606
Name
(GenBank) putative RNA 2',3'-cyclic 3'-phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
anj
Aminobacter niigataensis
Brite
KEGG Orthology (KO) [BR:
anj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
anj03016
]
AMD1_4618
Enzymes [BR:
anj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
AMD1_4618
Transfer RNA biogenesis [BR:
anj03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
AMD1_4618
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
2_5_RNA_ligase2
LigT_PEase
Motif
Other DBs
NCBI-ProteinID:
CAI2935892
LinkDB
All DBs
Position
AMD1:complement(4454498..4455109)
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AA seq
203 aa
AA seq
DB search
MSRQLQFDFGTSLGSRPPVCRARQAKGASDRLMFRLHPGQPGAMAATVDATCRAHGLTGK
PCEADRLHVSLVGFDNGREIEEAAVQNVSAAAATVRAPAFDLAFDRIISFRSGKLKPLVL
LCGESADLVVDLERRIVDALNGAGLGVRRRAGFVPHCTVLYDNRLVPETRLDRPIIVPVT
EFHLLHRKVGGWRRRVGSWPLLG
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtcaactgcagttcgacttcggaacctcgcttggctcgcggccgccggtctgc
cgggcaaggcaggcaaagggcgcgtcggaccggctcatgttccgcttgcatccggggcag
ccgggggcgatggcggcgacggtcgacgccacttgccgcgcccatggcctcacgggcaag
ccctgtgaggcagaccgcctgcacgtctcgctcgtggggtttgacaatggcagggagatc
gaagaggccgccgtacagaatgtatctgcggccgccgctacagtcagggcgccggcattc
gaccttgccttcgaccgcatcatcagcttccggagcgggaagttgaaaccgctggtcctg
ctgtgcggcgagagcgccgatctggtggtcgacctcgaacgtcgaatcgtcgatgcgttg
aacggtgcggggctcggggttcgtcgtcgcgccggcttcgtgccccattgcacggtgctc
tacgacaacaggctcgtcccggaaacgcgtctcgaccggcccatcattgtcccggtcacg
gagtttcaccttctgcacaggaaggttggtggctggcgccggcgcgtcgggagctggccc
ttgcttggctga
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