Anoxybacillus sp. B2M1: GFC28_2627
Help
Entry
GFC28_2627 CDS
T04370
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
anm
Anoxybacillus sp. B2M1
Pathway
anm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
anm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GFC28_2627 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anm03400
]
GFC28_2627 (mfd)
Enzymes [BR:
anm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GFC28_2627 (mfd)
DNA repair and recombination proteins [BR:
anm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GFC28_2627 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
PRD
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ANB55858
LinkDB
All DBs
Position
complement(2600553..2604086)
Genome browser
AA seq
1177 aa
AA seq
DB search
MRSLHHYFIENQDIQSIMKGIEAGLKEQLITGLSGSARSVFLSALYKETARPLLIVAHNL
FQAQKIYDDLVQILGSEEVFLYPVNEMIAAEMAIASPELKAQRLEVMNYWSEQKRGIVIA
PVAGVRRLLPPKSLWKENLLKITVEQEFDIEAYKHRFVQMGYKRVSVVSTPGEFSIRGGI
IDIYPLTAELPYRMELFDTEVESIRTFTVDDQRSHEEVQQVLIGPVNETLVYGDALQQGI
KRIEMGLKESLQKVKDEKTKQLLLEHISYELERLKQGQEIEQPYKYSALFYEQPASLLDY
LPENGLLLLDEVSRLQETSENLDEEEAEWQTSLLAEGKTIHTAFVSHSFSDLLQKNKRPI
LYLSLFLRHVPHTHPQNIVNISCKQMQNFHGQMPLLKAELERWKKAKYAIVFLAANAERM
RKLQSVLEDYEMDASPLPGGALPMHGKIQIIQGDLGTGFELPMQKLAVITEEELFKKRAK
KPARRQKLSNAERIKSYSELQVGDYVVHVNHGIGKYLGIETLEINGIHKDYIHIQYQGSD
TLYVPVDQIDQVQKYVGSEGKEPKIYKLGGSEWKKVKKKVESSVQDIAEDLIKLYAEREA
SKGYAFSPDTEMQREFEAAFPYQETDDQLRSIEEIKRDMESEKPMDRLLCGDVGYGKTEV
ALRAAFKAIMDGKQVAFLVPTTILAQQHYETIRERFQGYPIEIGLLNRFRTRKQQSETIQ
GLKNGTVDIVIGTHRLLSKDVAFKDLGLLIIDEEQRFGVSHKEKIKQLKANIDVLTLTAT
PIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEHTPELIREAIERELARDGQVFVLYN
RIEDIDIRAEEISMLVPDARVTYAHGRMSENELESVLLAFLEGQYDVLVTTTIIETGVDI
PSVNTLIVYEADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEKRRGVEQEEKPAD
VEIDIEIDAYIPDTYISDGLQKIDMYKRFKAISTLEELEELREEMLDRFGEYPDEVDYLF
QIAEMKVYAKQNGVESIKQHKQQIDLLFNDQASKDVQIQRLSKIGNRYGRIFGFGMEGPK
LKIVLYVKGLKPQEWLVILYETLKELVYEKDGKSVTA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgcgttcgttgcatcattattttatcgaaaaccaagatattcaatcgatcatgaaagga
attgaggcggggttaaaagagcagcttataacaggattatctggctctgctcgatccgta
tttttatctgctctttataaagaaacagcaagaccgcttcttattgttgctcataaccta
tttcaagcgcaaaaaatatatgatgatcttgttcaaattttaggatcagaggaagtgttt
ctgtatccagttaatgaaatgattgccgcagaaatggccattgctagcccggaactaaag
gctcagcgtttagaggtcatgaattattggtcagagcaaaaaagaggaattgtgattgct
cctgttgctggggtgcggcgtttattgccgccaaagtcgttatggaaagaaaatttactg
aaaattactgtggagcaagaattcgatattgaagcttataaacatcgttttgttcaaatg
ggatataagcgtgtgtccgttgtatcaaccccgggagaatttagcatccgcggtggtatt
attgatatttatccgttaacagctgaattgccataccgaatggaattatttgatacagag
gtagaatcgattcgaacatttacggttgacgatcaacgctctcatgaggaagtgcagcaa
gttttaatcggacctgtaaatgagacacttgtatatggggatgcgctgcagcaaggaatc
aagcgcattgagatgggattaaaagaaagtcttcaaaaggtcaaagatgaaaaaacgaag
cagctgctattggagcatatttcatatgagctcgagcgcttgaagcaagggcaagaaatt
gagcagccatataaatattcggcacttttttatgagcagcctgctagtttgctagattat
ctgccagaaaacggtttgttgttgcttgatgaagtgagccgactgcaagaaacgtcagaa
aatttagatgaagaggaagcagagtggcagacaagtttacttgcagagggtaaaacgatt
catactgcttttgtttctcactcattttctgatctattgcagaaaaacaaaaggccgatt
ttatatttatcgctctttttacggcatgttccgcacactcatccgcaaaatatcgtcaat
atttcctgcaagcaaatgcaaaattttcatggacaaatgccgttgctaaaggcggagcta
gaaagatggaaaaaggcgaaatacgccatcgtttttttagctgcgaatgcagaacgaatg
cgaaaattacaatctgttttggaagattatgagatggatgcttctcctttgcctggagga
gcgctgccgatgcatggcaagatccagattattcaaggagacttgggcactggttttgag
ttgccgatgcaaaagctggcggtcattactgaagaagaactatttaaaaagcgggcaaaa
aaaccagctcgccgacagaaattatcaaatgcagagcgaattaaaagctattcagagctg
caagtaggagattatgtggtccatgtcaatcatgggattggtaaatacttaggcatcgag
acgttagaaatcaatgggattcataaagactatattcatattcaatatcaagggagcgat
acgctctatgttcctgttgatcaaattgatcaggtgcaaaaatacgtaggctcagaggga
aaagaaccgaaaatttataaattgggcggttcggaatggaaaaaggtaaagaaaaaggtt
gagtcgtctgttcaagatattgcggaagacttaattaaactttatgcagagcgggaagca
agcaagggatatgcgttttctccagatacggaaatgcagcgcgaatttgaagcagccttt
ccttatcaagaaacagatgatcagctgcgttctattgaggaaattaaacgggatatggag
agcgaaaagccgatggatcgtttattatgcggcgatgtcggctacggaaaaacagaagtg
gcccttcgcgcagcctttaaagcgattatggatggaaagcaagtagcttttttagttcca
accactattttggctcagcagcattatgaaacgattcgagagcggtttcaaggatatccg
attgaaattggcctgcttaatcgttttcgcacaaggaagcagcaatcagagacgatccaa
ggattgaaaaatggcacggttgacattgtgattggcacccatcgattattatcaaaggat
gtagcctttaaagacttagggctgctcattattgatgaagagcaacggtttggtgtaagc
cataaagagaaaatcaaacagctaaaagcgaatattgatgtgctaacattgactgcaacg
ccgattcctagaacattgcatatgtccatgattggcgtgcgtgatttatccattattgag
actccgccggaaaatcgttttcctgtacagacatatgtgatggaacatacaccagagctc
attcgcgaggccattgagcgagagcttgccagagatgggcaagtatttgtcttgtacaac
cgcattgaagatattgatataagagcggaagagatctcgatgcttgtacccgacgctcgt
gtcacatatgcgcacgggagaatgagcgagaacgaactggaatctgtgcttcttgcattt
ttagagggacaatacgatgtgctagtgacgacgacaattattgaaacaggcgttgatata
ccaagcgttaatacattgattgtatatgaggcagataaaatgggactatctcagctttat
cagttaagagggcgcgttggccgttcaaatcgggtagcgtatgcctattttacgtatcga
aaggataaagtattaaatgaggttgctgagaaacggctgcaggcaattaaagaatttaca
gagctcggatcgggatttaaaattgccatgcgtgatttatccattcgtggagccggaaat
atactgggagctgagcagcatggatttattgactcggttggttttgacttgtattcacaa
atgctgaaagaagcgattgaaaaacgaagaggagtggaacaagaagaaaagccagctgat
gtggaaatcgatatcgaaatcgatgcttatattcctgatacgtatatttctgatggcttg
caaaaaattgatatgtataaacgctttaaagcgatcagcaccctagaagagttggaggag
cttcgcgaagaaatgttggatcgttttggagaatatccagatgaggtagattatttattc
caaattgctgaaatgaaggtatatgcaaaacaaaatggagtcgagtccattaaacagcat
aagcaacaaattgatttactatttaatgatcaggcttctaaggatgtacaaatccaacgt
ttatcgaaaataggaaacagatatggacgaatatttggatttggcatggaaggtccaaag
ctaaaaattgtgctgtatgtaaaggggctaaagcctcaggaatggctggtcatcttatat
gaaaccttaaaagagttagtatatgagaaagacggaaaatcggtgacagcttaa
DBGET
integrated database retrieval system
