Anabaena sp. YBS01: EH233_11335
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Entry
EH233_11335 CDS
T06262
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ann
Anabaena sp. YBS01
Brite
KEGG Orthology (KO) [BR:
ann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ann03016
]
EH233_11335
Enzymes [BR:
ann01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EH233_11335
Transfer RNA biogenesis [BR:
ann03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EH233_11335
Prokaryotic type
tRNA splicing ligases
EH233_11335
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Pellino_RING
Motif
Other DBs
NCBI-ProteinID:
QFZ12556
LinkDB
All DBs
Position
complement(2654177..2655358)
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AA seq
393 aa
AA seq
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MPYEKLEIKTQAPVLSWANHELGSEETKMAKNVASLPFVFKHIALMPDVHLGKGALVGSV
IATKEAIIPAAVGVDIGCGMSAIKTPFTGEHLEGKLKKIRLDIEAAIPTGFNENKEVEKS
VANWQRWRDFSDLHSGVQDLQTKAMRQMGSLGGGNHFLEVCLDTENQVWLMLHSGSRNIG
NQLAQCHISTAKELAKLAGNRLPDPDLAYFIAGTPEFKAYWNDLQWAQDYARVNRDVMMA
RFKRIVEKHLAGGKLTKPLLQVNCHHNYAEKEVHFDEDVYVTRKGAVRAQTEDYGIIPGS
MGAKSFIVKGKGNAHSFCSCSHGAGRLLSRSKAKNVYTLDDLIEQTKGVECRKDTGVLDE
IPGAYKPIDQVMENQADLVEVVATLKQVVCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccctacgaaaagttagaaattaaaacacaagcacctgtattatcttgggcaaatcat
gaactaggttccgaagaaaccaagatggcaaaaaacgtggcatcgctaccatttgtattt
aaacacatagcattaatgcccgatgttcatttaggaaaaggtgctttagttggttctgta
attgccactaaagaagcaatcattcctgcggcggtgggggtagatattggttgcggtatg
agtgcaattaaaacaccatttacaggtgaacatttagaaggaaaactcaagaaaattcgc
ctagatattgaagccgcaattcccacagggtttaatgaaaataaagaagtagaaaaatcg
gtggctaactggcaacgttggcgcgatttttcagacttacattctggtgtccaagactta
caaactaaagccatgagacaaatgggttctctaggcggcgggaatcactttttagaagtt
tgtttggatacagaaaaccaagtttggttaatgttgcactctggttcacggaatattggc
aatcaacttgctcaatgtcatattagtaccgcgaaagaattagcaaaactagcaggtaat
agattacctgatcctgatttggcttatttcatcgctggtacaccagaatttaaagcatac
tggaacgatttacaatgggcgcaagattatgcccgtgttaaccgtgatgtgatgatggcg
cgttttaaacgcattgttgaaaaacatcttgctggtggcaaattaactaaacctttgtta
caggtaaattgtcatcataactatgctgaaaaagaagtacattttgatgaagatgtgtac
gtaactcgtaaaggtgcagtccgcgctcaaacagaagattatggcattattcctggttca
atgggagcaaaatctttcattgttaaaggtaaaggtaatgcccatagtttttgttcttgc
tctcacggtgctggtcgtttattgtcaagaagtaaagccaaaaatgtctatactcttgat
gatttgattgagcaaaccaagggcgtagaatgccgtaaagatactggtgttttagatgaa
attcctggtgcttataaacccattgatcaagtgatggaaaatcaagcagacttggttgaa
gttgtcgctactctcaagcaagttgtttgtgtgaaagggtga
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