Athene noctua (little owl): 141972617
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Entry
141972617 CDS
T11550
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
anoc Athene noctua (little owl)
Pathway
anoc03013
Nucleocytoplasmic transport
anoc03015
mRNA surveillance pathway
anoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141972617 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
141972617 (DDX39B)
03015 mRNA surveillance pathway
141972617 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anoc03019
]
141972617 (DDX39B)
03041 Spliceosome [BR:
anoc03041
]
141972617 (DDX39B)
Enzymes [BR:
anoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141972617 (DDX39B)
Messenger RNA biogenesis [BR:
anoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141972617 (DDX39B)
Spliceosome [BR:
anoc03041
]
Complex C
Other components
EJC/TREX
141972617 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141972617 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
141972617
NCBI-ProteinID:
XP_074786641
LinkDB
All DBs
Position
34:join(153671..153881,153959..154086,154171..154263,154790..154973,155501..155619,158907..159038,159843..159952,160026..160170,160957..161104,161755..161771)
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENAAGGDGAEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggacaacgagctgctggattatgaggatgacgaggtggaaaac
gcggcggggggcgacggggccgaggcgccgcccaagaaggacgtgaagggctcctacgtc
tccatccacagctccgggttccgcgacttcctcctcaaacccgagctgctccgcgccatc
gtcgactgcggcttcgagcacccctcggaagtgcagcacgagtgcatcccgcaggccatc
ctgggcatggacgtgctgtgccaggctaaatccggcatgggcaagacggccgtgttcgtg
ctggccaccctgcagcagctggagcccgtcacggggcaggtgtcggtgctggtgatgtgt
cacacgcgggagctggcgttccagatcagcaaagagtacgagcgcttctccaagtacatg
cccagcgtgaaggtggcggtgttcttcggggggctgtcgatcaagaaggacgaggaggtg
ctgaagaagaactgcccccacatcgtggtggggaccccgggccgcatcctggcgctggcc
cgcaacaagagcctcaacctgaagcacatcaagcacttcatcctggacgagtgcgacaag
atgctcgagcagctcgacatgcgtcgggacgtccaggagattttccgcatgaccccgcac
gaaaagcaggtcatgatgttcagcgccacgctcagcaaggaaatccgccccgtctgccgc
aaattcatgcaagaccccatggagatcttcgtggacgacgagacgaagctgacgctgcac
ggcctgcagcagtactacgtcaagctcaaggacaacgagaagaaccgcaaactcttcgac
ctgctcgacgtcctcgagttcaaccaggtggtgattttcgtcaagtcggttcagcgctgc
atcgcgctggcgcagctgctggtggagcagaacttcccggccatcgccatccaccgcggg
atgccccaggaggagcggctctcccggtatcagcagttcaaggatttccagcgccgcatc
ctggtggccaccaacctgttcgggcgggggatggacatcgagagggtgaacatcgccttc
aactacgacatgcccgaggactcggacacctacctgcaccgggtggcgcgcgcggggcgt
ttcggcaccaagggcctggccatcaccttcgtgtcggacgagaacgacgccaaaatcctc
aacgacgtgcaggaccgcttcgaggtgaacatcagcgagctgcccgacgagatcgacatc
tcctcctacatcgaacagacccgataa
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integrated database retrieval system
