KEGG   Athene noctua (little owl): 141972781
Entry
141972781         CDS       T11550                                 
Symbol
SYMPK
Name
(RefSeq) symplekin
  KO
K06100  symplekin
Organism
anoc  Athene noctua (little owl)
Pathway
anoc03015  mRNA surveillance pathway
anoc04530  Tight junction
Brite
KEGG Orthology (KO) [BR:anoc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    141972781 (SYMPK)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    141972781 (SYMPK)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:anoc03021]
    141972781 (SYMPK)
   03019 Messenger RNA biogenesis [BR:anoc03019]
    141972781 (SYMPK)
Transcription machinery [BR:anoc03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     141972781 (SYMPK)
Messenger RNA biogenesis [BR:anoc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     141972781 (SYMPK)
    U7-dependent histone pre-mRNA processing factors
     141972781 (SYMPK)
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N PDS5 Cnd1 INTS7_N
Other DBs
NCBI-GeneID: 141972781
NCBI-ProteinID: XP_074786866
LinkDB
Position
35:complement(join(1226801..1226947,1227038..1227271,1227383..1227469,1227574..1227750,1228175..1228362,1228447..1228548,1228879..1228969,1229068..1229168,1229237..1229345,1229432..1229592,1229667..1229814,1229888..1230001,1230102..1230183,1230640..1230875,1230966..1231116,1231192..1231405,1231553..1231703,1231795..1231949,1232649..1232888,1233014..1233184,1233277..1233526,1233609..1233735,1233942..1234015,1234393..1234446,1234549..1234614,1234884..1235000,1235622..1235663))
AA seq 1262 aa
MRGGARRPLSARAADGVMAGPGGAEGPSPRMSVASQFFSEEECGSDGMSTSERVVDLLNQ
AALISNDAKINILKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVVGFIEEACKR
DIELLLKLIANLNMLLKDENVNVVKKAILTMTQLYKVALQWMVKSKVISELQEACWEMMA
AMASDIILLLDSDNDGIRTHAIKFVEGLIITLSPRMADSDVPKRHENDISLERIPKDHPY
IKYNVLWEEGKAALEQLLKFMVHPAISSINLTAALGSLATIARQRPMFMAEVIQAYETLH
ANLPPTLAKSQVSSVRKNLKLHLLSVLRHPSSGDFQPQITTLLVDLGTQQAEIARSMPSP
RDARKRPRDEPDAALKKMKIEPPLGEDDEDKDLEPTAVTVPKAAGQASVPSDTDITAEFL
QPLLTPENVANLVLISMVYLPEAMPASFQATYTPVESAGTEAQIKHLSRLMATQMTAAGL
GPGVEQTKHLKEEPKEEKAAKPESVVIKRRLSALAQGQAISVLGAQGSATNLLEEEAPQA
KRRPEPIIPATQPRLAGAGGRKKVFRLSDVLKPLSDTQMEKLKLSAVKRILRAERAVACS
GAAQARVKILASLVTQFEVPLKSEVLAFVLDDIRGRLDLAFAWLFQEYNAYLSRFPAGSL
ERYDECLIGLLAGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTL
RDLIFKRPSRQFQYLHVLLDLSSHEKDKVRQQALLFIKRMYEKDQLREYVEKFALNYLQL
LVHPNPPSVLFGADKDTEVAAPWTEETIKQCLYLYLALLPHNHKLIHELASVYTEAIADI
KRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRD
LYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGDGASAVSP
LNPGELLIALHNIDSSKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLM
RTVIQALTMYPRLGGFVMNILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVVLQLPPP
QLAAIFDKCPELREPLLSHVRALTPHQQAHIPLSTMAILEASARHEPDTREGPPGEEKPP
QQPSEEEAKGKAVTPAPGGAPSSGAPHSEAPPDLGGVDLEPPPIFISVPEDEESSGGAGS
PPDTTLDPPAAPPKDPPATTEPPLAEAPPRSPPSSEPPPPGTQSPEVPPGGAPDAPPGPA
EG
NT seq 3789 nt   +upstreamnt  +downstreamnt
atgcgcggtggcgctcggaggccgctgagcgcgcgggcggcggacggggtgatggcggga
ccggggggggccgagggccccagcccccgcatgagcgtggcctcccagttcttcagcgag
gaggagtgcggcagcgacgggatgagcacctcggagcgggtggtggatctcctcaaccaa
gcggccttgatcagcaacgacgccaagatcaacattctcaagcaggtgcaggagctgatc
atcaacaaggaccccacactgctggacaatttcttggatgagatcatcgccttccaggct
gacaagtccatcgaggtgcggaagttcgtggtgggcttcattgaagaggcctgcaaacgg
gacatcgagctgctgctgaaactcatcgccaacctcaacatgctgctgaaggacgagaac
gtcaacgtggtgaagaaggccatcctcaccatgacgcagctctacaaggtggccctgcag
tggatggtgaagtccaaggtgatcagcgagctgcaggaggcttgctgggagatgatggcg
gccatggccagcgacatcatcctcctcctcgattctgacaacgacggcatccgcacccac
gccatcaaattcgtggaggggctcatcatcaccctctcgccccgcatggctgactccgac
gttcccaaacgccacgagaacgacatcagcctcgagcgcatccccaaggaccacccctac
atcaaatacaacgtgctgtgggaggagggaaaggccgccctggagcagctgctcaagttc
atggtgcacccggccatctccagcatcaacctgacggccgcgctgggctcgctggccacc
atcgcccgccagcggcccatgttcatggccgaggtcatccaagcctacgagaccctccac
gccaacctgcccccgaccctggccaagtcgcaggtgagcagcgtccgtaagaacctgaag
ctgcacctgctgagcgtcctgcggcacccgtcctcgggggacttccagccccagatcacc
accctcctcgtggacctgggcacccagcaggccgagatcgcccgcagcatgcccagcccc
cgcgatgcccgcaaacggccccgcgacgagcccgacgccgccctcaagaagatgaagatc
gagccccccctgggcgaggacgacgaggacaaggacctggagcccacggcggtgacggtg
cccaaagcagccggccaggccagcgtcccctctgacacagacatcacggctgagttcctg
cagccgctgctcaccccggagaacgtcgccaacctggtgctgatcagcatggtgtacctg
cccgaggccatgcccgcctccttccaggccacctacacccccgtggagtcggccggcacc
gaggcgcagatcaagcacctctcccgcctcatggccacgcagatgacggcggcggggctt
ggcccgggcgtggagcagacgaagcatctgaaggaggagcccaaggaggagaaggcggcc
aagcccgagagcgtggtgatcaagcggcggctctcggcgctggcccagggccaggccatc
tctgttctgggtgcccaaggctcagctaccaacctgctggaagaagaagccccccaggcc
aaacgccgccccgaacccatcatcccagccacgcagccccggctggcgggcgccggcggc
cgcaagaaggttttccgcctgagcgacgtgctgaagccgctgagcgacacgcagatggag
aagctgaagctgagtgccgtcaagcgcatcctgcgcgccgagcgcgccgtggcctgcagt
ggggctgcccaggcccgcgtgaagatcctggcctcgctggtgacccagttcgaggtgccg
ctgaagagcgaggtgctggccttcgtcctcgacgacatccgtggacgcctggacctggcc
ttcgcatggctcttccaggagtacaacgcctacctgagccgcttccccgccggcagcctg
gagcgctacgacgagtgtctcatcgggctcctcgctgggctccaggagaagccagaccag
aaggacgggattttcaccaaagtggttctggaagcgccgctgatcacagagagtgcgctg
gaggtcatccgcaagtactgcgaggatgagagccggacctacctgggcatgtccacactc
cgtgacctcatcttcaagcggccatcacggcagttccagtacctccacgtgctgctggac
ctcagctcccacgagaaggacaaggtgcgccagcaggccctgctcttcatcaagcgtatg
tatgagaaggaccagctgcgcgagtacgtggagaagttcgccctcaactacctccagctc
ctggtgcaccccaaccccccctctgtcctcttcggcgccgacaaggacacggaggtggcc
gcgccatggacggaggaaaccatcaagcagtgcctctacctctacctggcgctgctgccc
cacaaccacaaactcatccacgagttggcctccgtctacaccgaggccatcgccgacatc
aaacgcaccgtcctgcgggtcattgagcagccgatccgcgggatggggatgaactcaccc
gagctgctgctgctggtggagaactgccccaagggtgccgagacgctggtgacgcgctgc
ctgcacagcctgaccgacaaagtgcccccctcgcccgagctggtcaagagggtccgggac
ctctatcacaagcggctgccagacgtgaggttcctcatccccgtcctcaacgggctggag
aagaaagaggtaatccaggcactgcccaaactcatcaagctcaaccccatcgtggtcaag
gaggtcttcaaccgcctgttggggacacagcatggtgacggcgcctcggccgtgtccccg
ctgaacccgggggagctgctgatcgcgctgcacaacatcgactcctccaagtgcgacatg
aaatccatcatcaaagccaccaacctgtgctttgccgagcgcaacgtctacacgtccgag
gtgctggcggtggtgatgcagcagctgatggagcagagccccctgcccatgctgctcatg
cgcacggtcatccaggccctcaccatgtacccccgcctcggcggcttcgtcatgaacatc
ctctcacggctcatcatgaagcaggtctggaagtaccccaaggtctgggagggcttcatc
aagtgctgccagcgcacgaagcctcagtccttccaggtggtgctgcagctgccccccccg
cagctggccgccatcttcgacaagtgcccggagctgcgggagccgctgctcagccacgtc
cgggccctcaccccccaccagcaagcccacatccccctctccaccatggccatcctggag
gcttccgcccgtcacgagcctgacacccgcgaggggccgcccggagaggagaagcccccc
cagcagcccagcgaggaggaggccaaagggaaggcggtgaccccagccccagggggtgct
cccagcagcggggccccccactccgaggcacctcccgacttggggggggttgaccttgag
ccccccccaatcttcatcagcgtccctgaggatgaggagagctcggggggggctgggtcc
ccccctgacaccacccttgacccccccgcggccccccccaaggacccccctgccaccacg
gagccccccctggctgaggcaccccccagaagccccccctcctcggagccgccccccccc
ggcacccagagccctgaggtgccccccggaggggcccctgatgcccccccggggccggca
gagggttga

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