Antarcticibacterium arcticum: FK178_03015
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Entry
FK178_03015 CDS
T06142
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
anp
Antarcticibacterium arcticum
Brite
KEGG Orthology (KO) [BR:
anp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
anp03009
]
FK178_03015 (rlmD)
Enzymes [BR:
anp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FK178_03015 (rlmD)
Ribosome biogenesis [BR:
anp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FK178_03015 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
MTS
TRAM
PrmA
Cons_hypoth95
Methyltrans_SAM
RrnaAD
Methyltransf_15
PCMT
FtsJ
Methyltransf_11
UPF0020
Methyltransf_12
N6_N4_Mtase
Methyltransf_2
Methyltransf_32
Methyltr_RsmB-F
PEP_mutase
Motif
Other DBs
NCBI-ProteinID:
QED36742
UniProt:
A0A5B8YFJ1
LinkDB
All DBs
Position
complement(708452..709861)
Genome browser
AA seq
469 aa
AA seq
DB search
MRRKKQNILFENLEVTGAGAKGKSIAKAPDGKVIFINNAVPGDIADIRTTKKKRSFHEGT
AVTIHEYSSKRVEPVCQHFGTCGGCKWQNMGYEHQLFYKQQEVENNLRRIGKIELPPVTP
ILGSEDIYFYRNKMEFSFSDSRWLTLEEIKSDRDFSDKNALGFHIPGMWDKILDIQKCHL
QADPSNAIRNFVKDFANKNEISFFNTRDQYGLLRTLMIRTSSNGELMVVVQFFEDDTVKR
ELLLDNIALNFPEITSLQYVVNPKGNDTIYDQEVICYKGRDHIFEEMEGLKFKINAKSFY
QTNSKQAYELYKITRDYAQLTGEELVYDLYTGTGTIAQFVAKNAKKVVGIEAVPVAIEDA
KENAKRNNIENTQFYAGDMRKVFTKEFIAEHGKPDVIITDPPRDGMHKDVIDQIIGILPQ
RIVYVSCNSATQARDLELLDQHYKVTRVRPVDMFPQTFHVENVVCLEKR
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagaaagaaacaaaatatattatttgaaaatttagaagttaccggcgcgggcgca
aaaggcaaaagtattgcaaaagcacccgatggtaaggtgatctttataaataatgccgtt
cctggtgatattgccgatattaggaccactaaaaagaaacgttccttccacgaaggaaca
gcagtgactatccacgaatattccagcaaacgtgtagaaccggtttgccagcattttgga
acctgcggaggttgtaaatggcaaaatatggggtatgaacaccagcttttttacaaacaa
caggaagttgaaaataatttacgcaggattggtaagatcgaattgcctcctgttacccct
atcctgggaagtgaagatatttatttttaccgcaataaaatggaattctcctttagcgac
agccgttggctaactctggaggaaattaaaagcgaccgggatttcagcgataaaaatgct
cttggatttcatattccgggcatgtgggacaagatcctggacatacaaaaatgccatttg
caggcagatcccagcaatgcaatcaggaattttgttaaggattttgccaataagaatgaa
atttcctttttcaatacccgcgaccaatatggtctattgcgtaccttaatgatacgtact
tcctccaacggggaacttatggtggtggtgcagttctttgaagatgataccgtgaagcgt
gagttattactggacaatatcgcgctaaactttcctgaaatcacctctttgcaatacgtg
gtgaacccaaaaggcaatgatacaatctatgatcaggaagtgatatgttataaaggcagg
gaccatatttttgaagaaatggaaggtcttaaatttaagatcaatgcaaaatccttttat
cagacgaattccaaacaggcctatgagttatataaaataacccgggattatgcccagctt
acaggagaagaactggtatatgacctttacacagggacgggaacgatagcccagtttgta
gcgaaaaatgccaaaaaagtagtgggaatagaagctgttccggtggcaattgaagatgca
aaggaaaatgccaaaaggaataatattgagaatacccaattctatgcgggagatatgcga
aaggtatttaccaaagaattcatagccgaacatgggaagccggatgttatcattacagac
cctcccagggatggtatgcacaaggatgtaattgatcaaataattggtatcttgcctcaa
cgcattgtatatgtaagctgtaactcggctacgcaggcacgtgaccttgaattgctggat
caacattacaaggttaccagagtgcgtcctgttgatatgtttccgcaaacctttcacgta
gagaatgtagtatgtttagaaaaaagataa
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