Antarcticibacterium arcticum: FK178_05055
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Entry
FK178_05055 CDS
T06142
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
anp
Antarcticibacterium arcticum
Pathway
anp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FK178_05055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anp03019
]
FK178_05055
03400 DNA repair and recombination proteins [BR:
anp03400
]
FK178_05055
Enzymes [BR:
anp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FK178_05055
Messenger RNA biogenesis [BR:
anp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FK178_05055
DNA repair and recombination proteins [BR:
anp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FK178_05055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HTH_Cmi2_C
ResIII
Cas3-like_C_2
NirdL-like_HTH
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QED37118
UniProt:
A0A5B8YJ65
LinkDB
All DBs
Position
1148936..1150840
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AA seq
634 aa
AA seq
DB search
MQEAKHILQKYWGHQSFRPLQQEIITGAVNNSDVLALLPTGGGKSLCFQIPPLLKEGICI
VVSPLVALMEDQVQTLQKKDIKALAIPGGISFGDLDTLLDNCIYGNYKFLYLSPERLQQE
LVQQRIKQMNVNLIAIDEAHCISQWGHDFRPAYLTIPVLRELHPEVPVMALTASATKEVV
KDICLQLKLRDPLIFKDSLERKNLAFKVLFAEDKIYRLRQTLQSKEESAIVYVRSRNATI
DIARELEHYGYSTAAFHGGMTAKEKSKKLEKWLREEVKIMVATNAFGMGIDKANVRHVIH
LNLPESIESYFQEAGRAGRDLEPATATIITNNSDLPLLRNQFLKTIPDLEFTILVYKKLC
SYFLIAYGEGQDITYDFNFSHFCTHYQLHSEKTYNTLQLLDRISLIKLTQQFRKKIYVQF
VISNRLLFSYIDENVSYDPVIKAILRTYGGIFENKLPVNPNLIAKKAGLGEMIVIETLKK
LYRDKIIDFEYQENDASITFLAPREDEQSIYPFSEYIKNQAKNKIEKINALLDYVANDKI
CRSRQLLHYFGEKDPEDCGICSVCQSTDKYIKKETIKRIYLEIIKELETGEKSSRDLVAR
IPFPEAGVIKVLQLLLEKDIIALTSGNNYKLKHI
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggaagccaaacacatattacaaaaatactggggccatcaaagttttaggccgctc
cagcaggaaataattacgggcgctgtaaataacagcgatgtcctggctttacttcctacc
ggcggagggaaatccctgtgctttcaaattcctcccctgcttaaggagggaatttgcatt
gtagtctctccattggtggctttaatggaagaccaggttcaaacccttcaaaaaaaggac
atcaaggctctggcgatcccgggaggaatttcttttggagatcttgacaccttgctggat
aattgtatttatggcaattataaatttttatatctctcgccggagcggctgcaacaggag
cttgtacaacaacgtattaagcaaatgaatgtaaaccttatcgccattgatgaggctcac
tgtatctctcaatggggccatgattttcgtcccgcatatctaactataccggttttacgg
gaacttcatcccgaggtaccggtcatggcgctcacagcctctgctaccaaggaagtggta
aaggatatctgcctgcaattaaagctacgcgatccacttatttttaaagattcccttgaa
aggaaaaatcttgcattcaaggtgttatttgctgaagacaaaatatacaggcttcgccaa
accctgcaaagcaaagaggaatcggccatagtttatgttagaagccgcaatgcaactatt
gatattgcgcgcgaacttgagcattatgggtatagtaccgctgcatttcacggcggaatg
acggcgaaggaaaaatctaaaaagcttgaaaaatggcttcgggaagaagtgaagatcatg
gttgccaccaatgcttttggaatggggatagacaaggccaacgtaaggcacgtaattcat
cttaatctacccgaaagtatagagagttatttccaggaggccgggagggcgggaagagat
ctcgaacctgctactgctactattataacaaataatagcgaccttccattattgaggaac
caatttttaaaaaccattccagaccttgaatttaccatactggtgtataagaaattgtgt
tcctacttcctcattgcatacggggaaggacaggatattacctatgacttcaatttttcc
catttttgtacccactaccagttacattctgaaaaaacatataacaccctgcaattgctt
gacaggataagccttattaaactcacgcagcagttcaggaaaaaaatctacgttcagttc
gttatttccaaccggctattattttcctatattgatgaaaatgtgtcttatgaccctgtt
ataaaggctattttaagaacctatggaggaatatttgaaaataaattgccggtaaatccc
aatttaattgcaaaaaaagccggcctgggagaaatgatagtaattgaaaccctcaaaaaa
ctttaccgtgataagatcatagatttcgaataccaggaaaatgatgcttccatcaccttt
ctggcaccccgcgaggacgagcagagcatttaccctttttctgaatatattaaaaaccag
gcaaaaaataaaattgaaaaaattaatgctttgctggactatgttgcaaatgataagatt
tgccgtagcaggcagctgttacattattttggtgaaaaagatcctgaagattgtggcatt
tgctcggtgtgtcaatctacagacaaatacattaaaaaagaaaccattaagcgcatttat
cttgaaataataaaggaactggaaacgggagaaaaaagttcccgtgaccttgtggcacgt
atcccttttcccgaagccggagttattaaagtattgcaattattgctggaaaaagatatt
atcgcccttaccagtggcaataattataaattaaaacacatatga
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