Antarcticibacterium arcticum: FK178_08885
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Entry
FK178_08885 CDS
T06142
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
anp
Antarcticibacterium arcticum
Pathway
anp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FK178_08885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anp03019
]
FK178_08885
Enzymes [BR:
anp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FK178_08885
Messenger RNA biogenesis [BR:
anp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FK178_08885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
DUF2529
Cas3-like_C_2
T3RM_EcoP15I_C
Fn3_Dep-1_5th
P-loop_SecA
DUF4830
Motif
Other DBs
NCBI-ProteinID:
QED37830
UniProt:
A0A5B8YIQ8
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All DBs
Position
1959907..1961178
Genome browser
AA seq
423 aa
AA seq
DB search
MTFNDLELTEPLQKAVQKAGYTTPTPIQQQSIPAILKGRDILGCAQTGTGKTAAFSIPTI
QLLSLNINGRGGKAPIKSLILTPTRELAIQIGESIAEYGAYSPLKHLVIFGGVPQHSQVQ
ALRNGVDILVATPGRLLDLVDQGYISLSQIEIFTLDEADRMLDMGFVHDVKKVIKKIPVK
RQTLFFSATMPDAILDLANSILTNPLKVEVTPVSSTAELIQQEVYFIDKNNKKNLLVDLL
EKSDADRVLVFTRTKHGANKVVKDMIKAGIKSEAIHGNKTQNARQKALTNFKNKTTRVLV
ATDIAARGIDIDELALVINYEIPNIAETYVHRIGRTGRAGASGKAISFSDYEEKAYIRDI
QKLIGLNIPVVNNHDYPMEFFEVPEKKPQQRRPSRNANSKSAPKKTGQGLAANRNRFGRQ
GNK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaacgacttagaattaactgaacccttgcaaaaggcggttcaaaaagcagga
tatacaactcccacccctatacaacaacaatctattcccgcgatattaaagggaagggat
atattgggatgcgcacaaacgggaaccggaaaaactgcggcattttcaatccctacaatt
caattacttagcttaaacataaacggtagaggtgggaaagcccctataaaaagtttgatc
cttactcctacccgggagctggccatacaaattggtgagagtattgccgagtatggtgcc
tatagccccctgaaacatttggtaatatttggtggggtaccacaacactctcaggtacaa
gccctgcgtaacggagtggacatccttgtagcaaccccgggaagattactggatcttgtg
gatcagggttatatttccctttcgcagatagagatctttaccctggatgaggcagacagg
atgctggatatgggatttgttcacgatgtaaagaaagtgatcaaaaaaataccggtaaaa
agacaaacccttttcttttcagcaaccatgccagatgccatcctggaccttgccaatagt
attttgaccaatccgctgaaggtggaagtaactcctgtttcttctactgctgaattgata
caacaggaagtttactttatagacaagaacaataaaaagaatttactggtagatcttctg
gaaaaatctgatgctgacagggttttggtctttacaaggaccaagcacggggcaaataag
gttgtaaaggatatgatcaaggccggaataaaatctgaagctattcacggaaacaaaacc
cagaatgccagacaaaaagctttgacgaattttaaaaataaaacaacccgtgtactggtt
gctacagatattgctgcccggggaatagatatagatgagcttgcgctcgtgatcaattac
gagatcccgaacattgcagaaacctatgttcaccgtattggaaggacaggacgtgcagga
gcaagtggtaaagctatttctttttcagattatgaagagaaggcgtatataagggatatt
caaaaattaataggattgaacattccggtggttaataaccatgattaccctatggaattt
tttgaagttcctgagaaaaaacctcaacaaagaaggccttcaagaaatgccaattctaaa
tcggcacccaaaaagaccggacagggacttgccgcaaacagaaaccgttttggaagacag
ggaaataaataa
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