Antarcticibacterium arcticum: FK178_09000
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Entry
FK178_09000 CDS
T06142
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
anp
Antarcticibacterium arcticum
Brite
KEGG Orthology (KO) [BR:
anp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
anp03016
]
FK178_09000
Enzymes [BR:
anp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FK178_09000
Transfer RNA biogenesis [BR:
anp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FK178_09000
Prokaryotic type
tRNA splicing ligases
FK178_09000
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Reg_prop
Motif
Other DBs
NCBI-ProteinID:
QED37851
UniProt:
A0A5B8YJP1
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All DBs
Position
complement(1985418..1986629)
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AA seq
403 aa
AA seq
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MPRLTIFGKELIDEKSIAQIKNCFGPEDLAVLTADAHYGYGHPIGGAVAYKDHISLSGVG
FDIACGNKAVRTSIKAADVNVPKVMDEIYRRISFGVGRINNEPLDNPVFDKIAKADFSPQ
RKLLDLATEQLGTVGAGNHFVDLFEDEEGYLWIGVHFGSRGFGHKTTTGFIAMSQNKGFF
DPAKEGGMDSKPILFDLDSAIGQEYIAAMNLAGEYAYAGRDVVVNKVLEILGTRETTFEV
HNHHNFAWQEEHFGEKYWVVRKGCTPAFPGQTGFIGANMEDTSVIIKGKDTPLSREGLFS
TVHGAGRVMSRRQAAGKTKWLRGKDGRKRPTIVSKGAVDFDAVRARLKNKVVLRGGGADE
APEAYKNLDEVLKHQGETIEVLHRLKPIGVAMAGDGTFDPYKD
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgccaaggttaaccatatttggaaaagaacttattgacgagaaatccattgcccagatc
aaaaactgttttggtcccgaggatttggcagtacttactgcagatgctcattacggctac
ggtcatcctattggtggggctgtggcttataaggatcatatatcactctccggggtagga
tttgatattgcctgtggcaacaaagccgtgcggacctctattaaagcggccgatgttaat
gtgcctaaagtaatggatgagatctacaggcgaatttcctttggggtagggcgtatcaat
aacgaacccctggataatcctgtatttgacaaaatagcaaaagccgatttctccccacag
cgtaaacttcttgatcttgccacagaacaactgggaacagtaggggcgggaaatcatttt
gtagacctatttgaagatgaggagggttatttatggattggtgtccattttggttcccgc
ggcttcggccataaaaccaccacaggatttatagcgatgtcccagaataaaggatttttt
gatcccgcaaaggagggtggaatggattccaaacctattctttttgatcttgattctgcc
attgggcaggaatatatcgcagccatgaatctggcaggagaatacgcatatgcaggaagg
gatgtggtggtaaataaagtattggagatcctgggaacccgggaaacaacatttgaagtg
cacaatcatcacaattttgcatggcaggaggaacatttcggggaaaaatactgggtggtg
cgcaaggggtgtacccctgcatttcctggccaaaccggttttataggagccaatatggaa
gatacttcagtaattattaaaggaaaagatactccactctccagggaaggattattttct
acggtgcatggggcaggaagagtgatgtcccgtaggcaggcggcaggaaaaacaaaatgg
cttcggggaaaggatggccgaaagcgccccacaattgtctccaaaggtgcggtagacttt
gatgcggtgcgggcccggttgaaaaataaggtagttttacgcggtggcggagctgatgaa
gctcctgaagcctataaaaatctcgatgaagtattaaagcatcagggagaaacaattgag
gtgcttcacaggttaaaacccattggcgtagctatggccggtgatggcacttttgaccct
tataaggattaa
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