Antarcticibacterium arcticum: FK178_13855
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Entry
FK178_13855 CDS
T06142
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
anp
Antarcticibacterium arcticum
Pathway
anp02020
Two-component system
anp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
anp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FK178_13855 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FK178_13855 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anp03021
]
FK178_13855 (rpoN)
Transcription machinery [BR:
anp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FK178_13855 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
SPT2_N
SF3b1
HTH_IclR
MarR
Motif
Other DBs
NCBI-ProteinID:
QED38731
UniProt:
A0A5B8YMJ8
LinkDB
All DBs
Position
complement(3059558..3061021)
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AA seq
487 aa
AA seq
DB search
MLKQQLNFKLSQKLSPQQIQLMKLIQLPTQAFEQRIKQELEENPALEDGKESLDDEFDED
YGSNEYEDDDYGNDEKESEINVDDYLSDDEIPSYRLQANNYSADDEDREVPFASGTSFSQ
YLKSQLSTFRLTETEKEIADFLIGSVDESGYIRRSIQDIVDDLAFTQNVYTDEATVEKVL
KHIQDLDPAGVGARSLQECLLIQLHRKEPRKDISLAIDLLEKSFDHFSKKHYAKLLAKHD
ISEDDLRDAIDIIEHLNPKPGGTFSGNTRMVEHVIPDFTIKIVDGELELSLNGRNAPEMH
ISNDYSNMLKGYKEAKEKTRAQKDAVMFIKQKLDSAKWFIEAIKQRQQTLMVTMSSIMNY
QKEYFLTGDERNLRPMILKDIADEIGMDVSTVSRVANSKYVDTPYGTKLIKEFFSESMKN
DQGEDVSTREIKKILEISIEEENKRKPLTDEKLAKLLLEKGYPIARRTVAKYREQLDIPV
ARMRKEI
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaacagcaattaaattttaaattatcgcaaaagctttcccctcaacagatccag
ttgatgaagctcattcaattgccaacccaggcttttgaacagcgcatcaagcaggaactg
gaggaaaatccggccctggaagatggaaaagaaagcctggatgatgaatttgatgaggac
tatgggagcaatgagtatgaagacgatgactatggaaatgatgagaaggagtctgaaatc
aatgtagatgattatttgagtgatgatgagatcccgagttaccgtttacaggcaaataat
tatagtgcagatgatgaggacagggaagttcccttcgcttccggaacttcattttcccaa
tatttaaaatcgcagttaagcacctttcgcttaactgaaacagaaaaagaaattgccgat
tttcttataggaagtgttgatgaaagcggttacatacgccgtagcattcaggatattgta
gatgacctggcttttacccaaaatgtttatacagatgaagcaacggtagaaaaggtcctt
aaacatatacaggacctggatcctgcaggagtgggtgcaagatcccttcaggaatgtctt
ttaatacaactacaccgtaaagagccacgaaaggatatttccctggcaatagatctgctg
gaaaagtcctttgaccacttcagcaagaaacattatgcaaaactcctggcaaaacatgat
ataagcgaagatgatctaagagatgctatagatattatagaacatttgaatccaaaaccc
ggcggaacattttcgggcaacacccgtatggtggagcatgtgatcccggattttactata
aagatcgtagacggggaacttgaactctccctgaatgggcgtaatgcgcctgaaatgcat
atttccaatgattacagcaatatgctgaaaggttacaaggaagcaaaggaaaagacaagg
gcacagaaagatgctgtaatgttcataaagcagaagcttgactcggcaaaatggtttatt
gaggcaattaagcagcgtcagcagactttaatggtcacgatgagctctataatgaattat
caaaaagaatacttcttaaccggtgatgagcgcaatttaaggcccatgatcttaaaggat
attgcagacgagattggaatggatgtttctacggtttcgcgggtggcgaacagcaagtat
gtagacacaccctacgggaccaaactcatcaaggaattcttttctgaatcaatgaaaaat
gaccagggagaagacgtctctacaagggagatcaaaaaaatactggaaatctctattgaa
gaggaaaataagcgaaaaccacttactgacgagaaacttgcgaaattattgctggaaaaa
ggctatcctattgcccgaagaactgtggccaaataccgggaacaacttgatatacccgtt
gcacgaatgcgtaaagaaatttaa
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