Amygdalobacter nucleatus: PYS63_05165
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Entry
PYS63_05165 CDS
T09414
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
anq
Amygdalobacter nucleatus
Pathway
anq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYS63_05165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anq03019
]
PYS63_05165
03016 Transfer RNA biogenesis [BR:
anq03016
]
PYS63_05165
Enzymes [BR:
anq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PYS63_05165
Messenger RNA biogenesis [BR:
anq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PYS63_05165
Transfer RNA biogenesis [BR:
anq03016
]
Prokaryotic type
tRNA degradation factors
PYS63_05165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WEG36543
LinkDB
All DBs
Position
complement(1130839..1132581)
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AA seq
580 aa
AA seq
DB search
MLKERIDFIRDYIEKQQHFSAKCKAETERFQPKIDGRSFSKRSQRRDLRNLPTLTIDGAS
AKDLDDAISLTLDEAGLRHLYVHIADVSHYVQAGTSLDEEAYARGNSFYLGEIVLPMLPK
ILANNLCSLQAGTNKLTLTAELVYDQEATLVRTDFYESVIKSDLRATYEDIYAYFQKGEL
DDPLTYELLTEADLANMPAAYRKLAKEICLAKQLAAQLRAKRLKHGSIMFEVPELEFTFN
AEHEPIKAGLHVITWTNQLIEEFMIAANEAVAAYAKANKIDIVYRTHGQPEAEKFANFLQ
LAKALGAIIPRSFYRGVKAIKPVDINHFLTRNQTNAAFSTLETMLLRSQAKACYLPQAKG
HFGLALADYCHFTSPIRRYSDLLTHRALKNYWHKKSNKHLAKNLSKQCEHISEQERMALM
MERDVDDILSAKYMQQFIGERYTAAVSGIVAHGVFLDLPNAIEGFLPFRDLADHFIFMPE
KMLALGLRTRKTLHLGDKIEVELARVDLETYLIDFVALDPYLGVKKSSSRVKKSSAKAKK
SHKAKGKAVKVIQAKPHAKKHKVIRKQRKKAGRINDRHKQ
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaagaaagaattgattttattcgtgattatattgaaaagcaacagcacttttca
gctaaatgcaaggcggagactgagcgcttccagcctaaaatagatggccgcagtttctct
aagcgcagccaaagacgtgatttaagaaatttaccgacattgacaattgacggtgcttcc
gcaaaggacttagatgatgctatttctttaactttagatgaagctggtttgcgccacctt
tatgttcatattgcagatgtcagccattatgtgcaggcaggcacttcgttggatgaagaa
gcttatgcacgtggcaatagcttttatctgggcgaaattgtcttgccgatgctaccgaag
atattagctaacaatctttgttctttacaagcaggtaccaataagctaactttgacagct
gaattagtttacgatcaagaagctacgcttgtcagaactgatttttacgaatctgtcatt
aagagtgatttacgggcgacatatgaagatatatacgcctattttcaaaaaggtgaatta
gatgatccattaacgtatgagcttttaacagaggctgatttagcgaatatgccagcagct
tatcgtaagctggcaaaagaaatatgtttggccaaacagctggcagctcagctcagagct
aaaaggcttaaacatggttcgatcatgtttgaagtgccagagctagagtttacatttaat
gctgagcatgaaccaattaaggctggattacacgttattacatggacaaaccaactgatt
gaagagttcatgattgcggcgaacgaggcagtagctgcttatgcgaaagctaacaagata
gatattgtttatcgtacacatgggcaaccagaagctgagaaatttgcaaactttttacag
ctagctaaggccttaggcgcaattattccacgctcgttttatcgtggcgttaaagcaatc
aagccagttgatattaatcatttcttaactaggaatcagactaacgccgcttttagcaca
ttggagaccatgcttttaagaagtcaagctaaagcttgttatctaccgcaagctaagggc
cattttggtctagctttggctgattattgccattttacttctccaatcagacgttatagc
gatttactgacacatcgggccttaaaaaattattggcataagaagagtaacaagcactta
gctaaaaatctaagtaaacagtgtgaacatatttctgaacaggaacgtatggcgcttatg
atggaacgcgatgtagatgacattttatctgctaagtatatgcagcaatttattggagag
cgttacactgcagctgtgagtggaattgttgcacatggtgtattcttggacttgcctaat
gccattgagggctttttgccttttagagatttagctgaccatttcatttttatgcctgaa
aaaatgctggcgttaggcttgcgtacgcgtaaaactttacatttaggtgataaaatcgaa
gtggagttagctagagtcgaccttgaaacttatttgattgattttgtagcacttgatcct
tatttaggcgtcaagaagtctagctctagagtcaaaaaatctagtgcaaaagcgaaaaaa
tcacataaggctaagggaaaagcagtcaaggttattcaagcaaaaccgcatgctaaaaag
cacaaagtcattaggaagcaaagaaaaaaggctgggagaattaatgacagacacaaacaa
taa
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