Arsenophonus nasoniae: ArsFIN_24630
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Entry
ArsFIN_24630 CDS
T05992
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ans
Arsenophonus nasoniae
Pathway
ans03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ans00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ArsFIN_24630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ans03400
]
ArsFIN_24630 (mfd)
Enzymes [BR:
ans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ArsFIN_24630 (mfd)
DNA repair and recombination proteins [BR:
ans03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ArsFIN_24630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
Helicase_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QBY43891
UniProt:
D2TYV0
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All DBs
Position
2274738..2278178
Genome browser
AA seq
1146 aa
AA seq
DB search
MSAKYYYQLPKQKGDTRHLGCLIGAAAAVECADIVERHPGLVVLIAQDTHNALKLCDEIQ
QFSSHSVTMLSDWETLPYDNFSPHQEIISVRLANLYRLPTLTKGLLIVPVNTLMQKVCPI
DFLTSNALVMQKGDKLSREKLRNNLDKAGYRHVEQVLEHGEYATRGALLDLFPMGSDYPY
RIDFFGDEIDSLRTFDVDNQLTISEVEQINLLPAHEFPTDDKAIELFRSQWREHFDIRRD
PEHIYQQISKKILPAGIEYWQPLFFNQPLSALFDYFPANTLLITQDLTAAVDRFWADTYQ
RYESRRVDPMRPLLLPETLWLNSEQLNRGLKAWPRIKISAESIAQKAGHTNLPYLALPDL
SISQQNKAPLDKLDQFSRNFTGRIIFSAQSAGRRETVQDLLAQIKINPNRIKTLNEANKP
GFYITVGAAEQGFTNQDQQIAFICESDILGERVIQRHTEQRKAINTDLLIRNLAELRPGQ
PVVHLEHGVGRYQGLTTLAAGGIQAEYLMLSYAGNDKLYVPVSSLNLISRYSGSSDENAP
LHKLGNDVWTKAKQKAAEKIRDVAAELLDIHAQRSIKPGFAFKHDKMQYQLFCQGFPFET
TVDQEQAINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAITNNQQVAVLVPTTLL
AQQHFDNFRDRFANWPVRIEMLSRFRSAKEQQQIINAAAEGKVDILIGTHKLLQNDIRWH
ALGLLIIDEEHRFGVRHKELIKSMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPS
RRLSVKTFVRQYDDLIVREAILREILRGGQVYYLFNDVKYIEKAKERLESLVPEARFVIG
HGQMRERELERVMTDFHRQRFNVLICTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSYHQAYAYLLTPHPKAMTIDAQKRLEAIAALEDLGAGFALATHDLEIRGAGELLGA
EQSGQLTTIGFTLYMELLENAVEALKQGKEPSLEELTRQQTEIELRMPVLLPNDYIPDVN
LRLSFYKRIASAKHDKELDELKIELIDRFGNLPDAGKQLLQSTAIRMHAQALGIKRIEAH
EKGGFIEFSEQNRVNATFLIALLQNSPEVYRLDGPNKLKFIKPLITYAERLTFVSQLIAD
FQSHQV
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcaaaatattattaccaactacccaaacaaaaaggtgatactcgccatttgggg
tgtctaattggcgcggcggccgctgttgagtgtgctgatattgtcgaacgccatccgggt
cttgttgttttgatcgctcaagatacgcataatgccttaaaattatgtgatgaaatacaa
caattttcttcccattcagtgacaatgctatcggattgggaaactttgccttatgataat
ttttcgccacatcaagaaattatttcagtgcggttagccaatctttatcgactgccaacc
ctgacaaaaggtttattaattgttccggttaataccttaatgcaaaaagtttgccctatt
gattttctaaccagtaatgccctggttatgcaaaagggagataaactttcacgtgaaaaa
ttacgtaataatcttgataaagccggttatcgacacgttgaacaagtgctggaacatgga
gaatatgctactcgtggcgcgttacttgatctgtttccaatgggcagtgactacccttat
cggattgactttttcggtgatgaaatcgacagcttaagaacttttgatgttgataaccaa
cttactataagcgaagttgagcagataaatttactgccagctcacgaattccccacagat
gataaagcgattgagttattccgtagccaatggcgagagcatttcgacatacgccgcgat
cctgaacatatttatcaacaaatcagtaaaaaaatactacccgcaggaattgaatactgg
caacccctttttttcaatcagccgttatctgcgctatttgactatttccccgctaatact
ttgctgattacacaagatttaaccgcggctgttgatagattttgggctgatacttatcag
cgttatgagagtcgccgtgttgatcccatgcgtcctctactattacctgaaacactttgg
ctaaatagcgaacaacttaatcgaggtcttaaggcatggccacgtatcaaaatatccgct
gaatcaattgcccaaaaagcaggccatactaatctaccctacttagccttacctgattta
agtatcagtcagcaaaataaagcgccacttgataaactcgatcagttcagcagaaatttc
accgggcggattattttttctgcacaaagcgctggacgccgtgaaactgtacaagattta
ctagcacagataaaaattaatcctaatagaattaaaaccctaaatgaagccaacaaacca
ggcttttatatcaccgtcggtgcggctgaacagggttttactaatcaggatcaacaaatt
gcctttatttgtgaaagcgatattttaggtgaacgggttattcaacgtcatactgaacaa
cgtaaagctatcaataccgacctattgatccgcaatctggcagaattacggcctgggcaa
cccgttgttcacctggaacatggggttggacgttatcaggggttaaccactttagcagca
ggcggtattcaagccgagtacttaatgctgagttatgctggcaatgataaactttatgtg
ccggtttcatcgctaaatttgattagtcgttatagtggcagcagcgatgaaaatgcgcca
ctacataaattaggtaacgatgtttggacgaaagccaaacaaaaagcggctgaaaaaatt
cgtgatgttgcagcagaactgttagatatccacgctcaacgtagtataaagccgggtttt
gctttcaaacacgataaaatgcaatatcaacttttttgtcaaggttttcccttcgaaaca
accgttgatcaggaacaagcaattaatgccgtgttaagtgatatgtgccaaccaattgct
atggatcgcttggtctgtggtgatgttggctttggtaaaaccgaagtggcaatgcgagca
gcatttctggcaataaccaataatcaacaagtagccgtattggtgccaacaacgctgcta
gcacaacaacattttgataattttcgcgaccgttttgctaactggccggtacggattgaa
atgctgtctcgctttcgtagtgcaaaagagcaacaacagattattaacgcagcggctgaa
ggcaaagttgatatcttaattggtacccataaattattgcaaaatgatatccgctggcat
gcactcgggttattaattattgatgaagagcatcgtttcggtgttcgtcataaagagtta
attaaatcgatgcgagcgaatgttgatattctcacattaacggcaacacctattcctcga
accctcaatatggcaatgagtggcatgcgtgatctgtctattattgctacccctccttct
cgtcgattatccgttaaaacctttgttcgtcaatatgatgacttaattgtgcgggaagcc
attttgcgtgagatattgcgcggtggacaagtttactatctatttaatgatgtaaaatat
attgaaaaagccaaagagcgtttggagtcgttggtacctgaagcgcgttttgtaattggc
catgggcaaatgcgtgaaagagagctggagcgtgtgatgaccgatttccatcggcagcgg
ttcaatgtattaatttgcaccaccattattgaaacgggcatcgatattcctagcgctaat
actatcattattgaacgcgcagatcattttggtttagcgcaattacatcaattacgtggc
agagttggtcgttcttaccatcaagcttatgcatatcttttaacgccacatcctaaagcg
atgaccatcgatgcgcaaaaacggcttgaagcgatcgcagcgctagaagatcttggcgct
ggctttgcattagcaacccatgatctagaaattcggggcgcaggggagttgcttggtgca
gaacaaagtgggcagctgactactatcggatttacactttatatggaactactcgaaaat
gctgttgaggcattaaagcaaggcaaagagccttctttagaagagctaacccgccaacag
actgaaattgagttaagaatgccggtattgctgccgaatgattatatccctgacgtcaat
ctcagattatctttttataaaagaatagccagcgccaaacatgacaaagagcttgatgag
ttaaaaattgaacttatcgatcgttttggtaatctgcccgatgcaggcaaacaattacta
caatctactgccatccgaatgcatgcgcaagcattaggcattaaacgcatagaagcgcat
gaaaaaggtggatttattgaatttagtgaacaaaatagagtaaacgccacttttcttatc
gccttactacaaaactcaccagaggtttatcgactagatggccctaataaattgaaattt
attaaaccattaattacttatgctgaaaggctcactttcgttagccaattaatagccgat
tttcaatcacatcaagtataa
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integrated database retrieval system
