Arcobacter nitrofigilis: Arnit_0055
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Entry
Arnit_0055 CDS
T01235
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
ant
Arcobacter nitrofigilis
Pathway
ant02020
Two-component system
ant02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ant00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Arnit_0055
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Arnit_0055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ant03021
]
Arnit_0055
Transcription machinery [BR:
ant03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Arnit_0055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
DUF3349
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
ADG91725
UniProt:
D5V3L4
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All DBs
Position
complement(54794..56041)
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AA seq
415 aa
AA seq
DB search
MAQTLSTSASQKQNLNLSLKLWLPMLQSSLQDLEKHLKNVSYENPFLEIKKPKEFYANFM
PQGTSGEFIESLAIYNESLNDVISEQICAPNFSTPNSQKVAMEILCDINEEGYFEGDIEK
IAITCNVYKEYVESIRQRFSLLEPSGIGSLNLSESFLFQLDACDKKIDDELYNFIKKIIK
DISHLDKYAGHHRFDDAKEIIKYFNNPPAINYMNDNVQIIPDFFVDIGEDINIKINHAYY
PDLEVKDAFNSKNEGIKEKLKEARDLVNLLGLRKSTLYKIVLLIVEKQISFFVGGELRPY
SMQELANEIGFAESTISRAVANKYIECSLGTFPLKHFFSNAVNNKDLSSSEIKNYIKSLV
EYEDKETPLTDQDILDAIQEKFNLEMVRRTITKYRKMLDMPSSKERKKLYKVENL
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaacattatcaacctcagcttcacaaaagcaaaatcttaatttatctttgaaa
ttgtggcttccgatgctacaatcttcacttcaagacctagagaaacatctaaaaaatgtc
tcttatgaaaatccatttttggaaataaaaaaaccaaaagaattttatgcaaactttatg
ccacaaggaacaagtggagagtttatagagtcattggcaatttataatgagtctttaaat
gatgtaataagtgaacaaatttgtgccccaaatttttcaaccccaaactctcaaaaagtt
gctatggaaattttatgtgacataaatgaagagggatattttgaaggagacatagaaaaa
attgcaataacatgtaatgtatataaagagtacgtagaatctattagacaaagattttca
ctcttagaaccaagtggaattggatcattaaatttatcagagtcatttttatttcaacta
gatgcctgtgataaaaaaattgacgatgagttatataattttataaaaaaaattataaaa
gatatctctcacttggataaatatgcggggcaccatagatttgatgatgcaaaagagata
attaaatattttaataatccacctgctattaattatatgaatgacaatgtacaaattatt
cctgatttttttgtggatattggggaagatattaatatcaaaataaaccatgcgtactac
ccagatttagaagtaaaagatgctttcaattctaaaaatgaaggaataaaagaaaaatta
aaagaagcaagagatttagtaaacttattgggtctacgaaaatcaactctatataaaata
gttctgttgattgttgaaaaacaaatttcattttttgttggaggtgagttaagaccatac
tctatgcaagaattagcaaatgagattggttttgcagaatcaactatttcaagagctgta
gcaaacaaatacattgagtgttctttgggaacatttcctctaaaacattttttctcaaat
gcagtcaataataaagatttatcctcttcagagataaaaaactacataaaaagtcttgtt
gaatatgaagacaaagaaaccccactaacagaccaagatatattagatgctattcaagaa
aaatttaatctagaaatggtaagacgtactattacaaaatatagaaaaatgctagatatg
ccctcatcaaaagagagaaagaaactttataaagtagagaatttataa
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