Arcobacter nitrofigilis: Arnit_0668
Help
Entry
Arnit_0668 CDS
T01235
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ant
Arcobacter nitrofigilis
Pathway
ant03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Arnit_0668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ant03400
]
Arnit_0668
Enzymes [BR:
ant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Arnit_0668
DNA repair and recombination proteins [BR:
ant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Arnit_0668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADG92333
UniProt:
D5V2A0
LinkDB
All DBs
Position
652093..655062
Genome browser
AA seq
989 aa
AA seq
DB search
MNSLFEFFKEKNDCKLLIVSDDKEAQEAFDVLSYNQKKPFVLADFRANFGDDLLSFSEEL
QNITKTLNEFYSYKKENKVLVVPLRTASYKMPVEKCFDSFKIEFASTIDLDKLKDKLYNW
GYYFVDIVTSEGEVSLRGDILDICPLGASKGFRVSLFDDEVESIREFDIEDQKSAKEEID
SFSITPAFLALNEDEIDRINEELESVESDAFIKDIHSLGFWYLDDLGEYLPSKFNSYITY
NALDELDEAYIFESKRIDKEKFLTLPKIPKAKKYQIINPANVKEFLTFHDGKKHTIISTT
EAKVKSFDLDLADKKIKYIFEPYIINLVSDDEVIISLNKEIKKKRKKKIKLVLDELLVND
FVVHEQHGIGQYKGIEPVVVMGAKRDFVIVAYANEDKLLIPVENIDLIDRYVADGSSYAV
VDTLGKGSFAKLKDKVKDRLFAIANDIIKLAAARELVNGIKINCDKKILKDFSTSAGFDY
TKDQKRSINELFDDLSSGKVMDRLLSGDVGFGKTEVAMNALLAVILDGHQALFVCPTTLL
ASQHFHSMKKRFDEYGIRMAQLDGKTTAKEKTYVKKALESGDIDLVVGTHSLLDIKTKDL
ALVIIDEEHKFGVKQKEKLKELREDVHIFSMSATPIPRTLNLALSKLKGMSSLLTPPTER
LGVRTYVKEFEEKLIKEIVLREKRRGGQLFYVHNNIASMEAKKADIQEILPNIKIEMIHS
KITQVKAEKLIEDFNDGKFDILLATSIVESGLHLPNANSMIIDGADRFGIADLHQLRGRV
GRGHKEGFCYFIVEDKKKITSDAIKRLLALESNSYLGSGTALAHQDLEIRGGGNIIGEAQ
SGHIKQIGYGLYLKMLEDTLAILSGESKEESQVVDIKLAISAFISNDYIVEDRVRLELYR
RLGKAKSKEAIYEIEEEMEDRFGKPDIPTKQFLELIMIKVLALQKEIKTVSSYEMNVTFT
KNDDIKETIKSPSKDDDDIIATTLKYLRK
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
ttgaatagcctatttgaattttttaaagagaaaaatgattgtaaacttctaatagtaagt
gatgataaagaggcacaagaagcctttgatgtattatcttataatcaaaaaaaacccttt
gtattagctgattttagagcaaattttggagatgatttactctctttttcagaagagtta
caaaatataactaaaactttaaatgagttttattcttataaaaaagagaataaagttcta
gttgtacctttacgaacagcttcatataaaatgcctgtagagaagtgctttgactctttt
aaaatagagtttgcttcaactattgatttggataaattaaaagataaactttataattgg
ggatactattttgtagatattgtgacaagtgagggagaagtatctcttcgaggggatata
cttgatatttgtcctttgggagctagcaaaggttttagagtaagtctgtttgatgatgag
gttgaaagtattagagagtttgatattgaagatcaaaaatcagcaaaagaagagatagac
tcttttagtattactcctgcttttttggctttaaatgaagatgagatagatagaataaat
gaagagttagagagtgttgaaagtgatgcttttataaaagatatacactctttaggattt
tggtatttggatgatttgggagagtatttaccttctaagtttaattcatatattacttat
aatgcccttgatgaacttgatgaagcatatatctttgaatcaaaaagaatagataaagag
aagtttttaactcttccaaagattccaaaagcaaaaaaataccaaataataaatccagca
aatgtaaaagagtttttaacttttcatgatggcaaaaaacatactatcatttcaacaact
gaagccaaggtaaaaagttttgatttagacttagctgacaaaaaaataaaatatattttt
gaaccatatattataaatcttgtaagtgacgatgaggtaattatttctttaaataaagag
ataaagaaaaaaagaaaaaagaaaattaaactagttctcgatgaacttcttgtaaatgat
tttgttgtgcacgaacaacatggtattggacaatacaaaggaatagaacctgttgttgta
atgggagcaaaaagagactttgtaatagttgcatatgcaaatgaagataaacttttaata
ccagttgaaaatattgatctcatagatagatatgtggcagatggtagttcttatgctgtt
gttgacactttaggtaaaggaagttttgccaaactaaaagataaagtaaaagatagactt
tttgccattgcaaatgatattataaaattagcagctgcacgtgaacttgtaaatggtata
aaaataaattgtgataaaaaaatattaaaagattttagcactagtgccggttttgattat
actaaagatcaaaaaagaagtataaatgagctatttgatgatttaagtagtggaaaagtg
atggatagattgctttctggtgatgttggttttggcaaaactgaagttgcgatgaatgca
cttttggctgttattttagatggacatcaagctctttttgtatgtcctactactttgttg
gcttctcaacattttcatagtatgaaaaaaaggtttgatgagtatggcataagaatggct
caacttgatggaaaaacaactgcaaaagaaaaaacctatgtgaaaaaagcactagaaagt
ggagatatagatttagtagttggaactcactctttacttgatattaaaacaaaagattta
gccttggttataattgacgaagagcataaatttggtgtaaaacaaaaagaaaaattaaaa
gaactaagagaagatgttcatattttctcaatgagtgcaactccaattccaagaactcta
aatttagccctatcgaaactaaaaggtatgagttctcttttgactcctccaactgagaga
ttaggagtaagaacttatgttaaagagtttgaagaaaaactaatcaaagagatagtttta
agggaaaaaagaagaggtggacaacttttttatgtgcataataatatcgcttctatggaa
gcaaaaaaagcagatattcaagagattttaccaaatataaaaattgagatgattcactct
aaaattactcaagtaaaagcagaaaaattaatcgaagatttcaatgatgggaaatttgat
atattacttgctacttcaatagtagaatcaggacttcatctaccaaatgcaaactcaatg
ataattgatggtgcagatagatttggaatagcagatttacatcaacttcgaggacgagta
gggcgaggtcataaagaaggtttttgttattttatagttgaagataagaaaaaaattaca
agtgatgctatcaaaagattacttgcattagagtcgaattcttacctaggaagtggaaca
gccttagcccaccaagacttagaaataagaggtggtggaaatattataggtgaagctcaa
agtggacatatcaaacaaataggatatggtttatatctaaaaatgttagaagatacactt
gctattttaagtggtgaatcaaaagaagagagtcaagtagtagatataaaacttgctatt
tccgcttttatttcaaatgattatattgttgaagatagagtaaggttagaactttataga
cggcttggaaaagcaaaatcaaaagaagctatttatgaaattgaagaagagatggaagat
agatttggtaagccagatattccaacaaaacagttcttagaacttattatgataaaagtt
ttagctttacaaaaagagataaaaacagtatcaagttatgagatgaatgtaacttttaca
aaaaatgatgatataaaagagacaataaaatcaccaagtaaagatgatgatgatattatt
gctacaacattaaagtacttacgaaaataa
DBGET
integrated database retrieval system
