Arvicanthis niloticus (African grass rat): 117693319
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Entry
117693319 CDS
T08817
Symbol
Scn11a
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
anu04040
]
117693319 (Scn11a)
Ion channels [BR:
anu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117693319 (Scn11a)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
IQ_SCN5A_C
GPHH
Motif
Other DBs
NCBI-GeneID:
117693319
NCBI-ProteinID:
XP_034339742
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Position
21:complement(40034248..40105955)
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AA seq
1768 aa
AA seq
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MEEKYYPVIFPDERNFRPFTSDSLAAIEKRIAIQKEKKNSKGKAAAEPQPRPQLDLKASR
KLPKLYGDVPPELIAKPLEDLDPFYKDHKTFMVLNKKRTIYRFSAKRALFVLGPFNPIRS
LMIRISVHSVFSMFIICTVIINCMFMANATEKTFDNDIPEYIFIGIYILEAVIKILARGF
IVDEFSFLRDPWNWLDFIVIGTAVAPYFHCNKVNLSALRTFRVFRALKAISVISGLKVIV
GALLRSVKKLVDVMVLTLFCLSIFALVGQQLFMGILNQKCIKDNCGPNPTSNQDCFVKEK
DSEDFVMCGTWLGSRHCPDGSTCNKTTFNPDYNYTNFDNFGWSFLAMFRVMTQDSWEKLY
RQILRTSGIYFVFFFVVVIFLGSFYLLNLTLAVVTMAYEEQNRNVAAETEAKEKMFQEAQ
QLLKEEKEALVAMGIDRTSLNSLQASSFSPKKRKFFGSKTRKSFFMRGSKMARASASDSE
DDASKNPQLLEQTKRLSQNLPVDLFDEHVDPLQRQRALSAVSILTITMQEQEKSQEPCFP
CGKNLASKYLVWDCSPQWLRIKKVLQMIMTDPFTELAITVCIIINTVFLAMEHHDMDDSL
KTVLKIGNWVFTGIFLAEMCLKIIALDPYHYFQHGWNVFDSIVALLSLADVLYNRLSNKN
LSFLASLRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLTIVVFIFSVVGMRLFGA
KFNKTAYVPREPCRRRWHMDDFYHSFLVVFRILCGEWIENMWECMQEMEGSPLCIIIFVL
IMVIGKLVVLNLFIALLLNSFSNEEKDGNPEGETRRTKVQLALDRFRRAFSFMAHTLWNF
CCKRCRRQNSPKPKEARESFSGENKAMVLLDARPWKEYDSEMTLYTGQAGAPLAPLAEEE
DVMECCGECGTPPTSQPSAGVQACDLPPETKQLPSPDDHGVEMEVFSEEDPRLTIQSARK
KSDAASVLSECSTIDLNDIFRNLQKTVSPKKQPDRCLPKGLSCIFLCSKTNKRKSLWVLW
WNLRKTCYQIVKHSWFESFVIFVILLSSGALIFEDVNLSSRPQVDKLLKCTDNIFTFIFL
LEMILKWVAFGFRRYFTSAWCWLDSLIVVVSVLSLMNLPNLKSFRTLRALRPLRALSQFE
GMKVVVNALISAIPAILNVLLVCLIFWLIFCILGVSFFSGTFGRCINGTDINKYLHHTQI
PNRNQCNISNYSWKVPNVNFDNVGSAYLALLQVATYKGWLDIMNAAVDSRGKDEQPACEA
NPGAYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKISGQDIFMTEEQKKYYNAMKKLG
TKKPQKPIPRPLNKCQAFVFDLVTSQVFDVIILGLIVLNMIIMMAESDGQSDEVKKIFDI
LNIAFVVIFTVECLIKVFALRQHYFTNGWNLFDCVVVVLSIISTLVSGLENSNIPFPPTL
FRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAIFGMSWFSK
VKKGSGIDDIFNFETFSGSMLCLFQITTSAGWDTLLNPMLDSNDHCNSSSSSSQDSCQQP
WIAIVYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLGEDDFEIFYEIWEKFDPEA
TQFIQYSALSDFADALPEPLRVAKPNKFQFLMMDLPMVTGDRLHCMDVLFAFTTRVLGNS
SGLDTMKAMMEEKFMEANPFKKLYEPIVTTTKRKEEEQCAAVIQRAYRKYMEKMIKLRLK
DGSGSSLQVFCNGDLSSLDVGKVKVHYD
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaagtactacccagtgatcttcccagacgagcggaatttccgccccttcact
tccgactctctggctgcaatagagaagcggatcgccatccaaaaggagaagaagaattcc
aaaggcaaggcagcggccgagccccagcctcggcctcagcttgacctaaaggcctccagg
aagttacctaagctctatggggacgttccccctgagcttatcgcgaagcccctggaagac
ctggacccgttctacaaagaccataagacattcatggtgttgaacaagaagagaacgatc
tatcgcttcagtgccaagcgggccttgttcgttctggggccctttaatcccatcagaagc
ttgatgattcgtatctctgtccattcagtctttagcatgttcatcatctgcaccgtgatc
atcaactgtatgttcatggctaatgctacggaaaaaacttttgacaatgacattcccgaa
tacatcttcattggaatttatattttagaagctgtgattaaaatattggcaagaggcttc
attgtggatgagttttctttcctccgagatccgtggaactggctggacttcattgtcatt
ggaacagcggttgcaccttattttcactgtaacaaagtcaacctttctgcccttcgtacc
ttccgggtgttcagagctctgaaagctatttccgttatctcaggtctgaaggtcattgta
ggtgccctgctgcgctcggtgaagaagctggtggatgtgatggtcctcactctcttttgc
ctcagcatctttgccctggttggccagcagctgttcatgggaattctgaaccagaaatgt
attaaggacaactgtggccctaaccctacatctaaccaggattgctttgtaaaggaaaaa
gatagcgaagacttcgtcatgtgtggcacctggcttggcagcagacattgccctgatggc
tctacatgcaataaaaccacatttaacccagactataattacacgaactttgacaacttt
ggctggtctttcctcgccatgttccgggttatgactcaagactcctgggagaagctttat
cgacagattcttcggacctctgggatctactttgtcttcttcttcgtggtggttatcttc
ctgggctctttctacctgcttaacttaaccctggccgtcgtcaccatggcttacgaagaa
cagaacagaaatgtagctgccgagacagaggccaaggagaagatgtttcaggaagcccag
cagctgttaaaggaagagaaagaggctctggttgccatggggattgacagaacttccctt
aattcccttcaagcttcatccttttccccaaagaagaggaagttttttggtagcaagacg
agaaagtccttctttatgagagggtccaagatggcccgagcctcagcgtctgattcagag
gacgatgcctctaaaaatccacaactccttgagcaaacaaaacgactgtcccagaacttg
ccagtggacctctttgatgagcacgtggaccccctccagaggcagagagcgctgagcgct
gtcagtatcttaaccatcaccatgcaggaacaagaaaaatcccaggagccttgtttccca
tgtgggaaaaacttggcatctaagtacctagtgtgggactgtagccctcagtggctgcgc
atcaagaaggtcctgcagatgatcatgaccgatccctttacggagctggccatcaccgtc
tgcatcatcatcaacaccgtcttcttggccatggagcaccacgatatggatgactcttta
aaaaccgtactgaaaataggaaactgggttttcactggaatattcttagcggaaatgtgt
ctcaagatcatcgccctggacccttaccactacttccagcacggctggaacgtctttgac
agcatcgtggcccttctgagtctcgctgacgtgctctataacagattgtctaataaaaac
ctctccttcctggcttccctcagagtgctgagggtgttcaagttagccaaatcctggccc
acattaaacaccctcattaagatcatcggccactccgtgggtgcgctcggaaacctcact
gtggtcctgaccatcgtggtcttcattttttccgtggttggcatgcggctctttggcgcc
aagttcaacaagaccgcctacgttccccgggagccgtgtaggcggcgctggcacatggat
gacttctaccactccttcctggtggtgttccgcatcctctgtggggaatggatcgagaac
atgtgggaatgtatgcaggagatggaaggctccccgctgtgcatcatcatctttgtgctg
atcatggtgattgggaagcttgtggtacttaacctcttcattgctttgctgctcaattcc
ttcagcaatgaggagaaggatgggaacccagaaggagagaccaggagaaccaaagtgcag
ctagccctggatcgcttccgccgggccttctccttcatggcacacactctctggaatttt
tgttgcaagagatgcaggaggcaaaactcgccaaagccaaaagaggcaagggaaagcttt
tctggtgagaataaagccatggtcctcctggatgcgaggccctggaaggagtatgattca
gaaatgactttgtacaccgggcaggccggggctccgctggccccactcgcagaggaagag
gatgttatggaatgttgtggtgaatgcggtaccccgcccacctcacaacctagtgctgga
gttcaggcctgtgacctccctccagagaccaagcagctccccagcccagatgaccacggg
gttgaaatggaagtgttttctgaagaagatccgcgtttaactatacagagtgctcgaaag
aagtctgatgcagcaagcgtgctctcggaatgcagcacgattgacctgaatgatatcttt
agaaatttacagaagacagtttcccctaaaaagcaaccagatagatgcttacccaagggc
ctcagttgtatctttctatgcagcaaaacaaacaagagaaagtccctctgggtcttgtgg
tggaaccttcggaaaacctgctaccaaattgtaaagcacagctggtttgagagcttcgta
atctttgtcatcctgctgagcagtggagcgctgatatttgaagatgtcaatctctccagc
cggccccaagttgataaattactaaagtgtaccgataatattttcacatttatttttctc
ctggaaatgattctgaagtgggtggcctttggattccggaggtattttaccagtgcctgg
tgctggctcgattctctcattgtggtggtgtcggtgctcagtctcatgaacttaccaaac
ttgaaatccttccggactctacgagcgctgaggcctctgcgggcgctgtcccagtttgaa
ggcatgaaggttgtcgtcaacgccctcatcagtgccataccagccattctcaatgtcttg
ctggtctgtctcattttctggctcatattttgtatcctgggagtaagttttttttctgga
acgtttggaagatgcatcaacgggacagacataaataagtatttacaccatacccaaatt
ccaaaccggaaccaatgtaacattagtaattactcgtggaaggtcccgaacgtcaacttt
gacaatgtggggagtgcctaccttgccctgctgcaagtggcaacctataagggctggctg
gacattatgaatgcagctgtcgattccagggggaaagacgagcagccggcctgtgaggca
aatcccggcgcgtacctttacttcgtggttttcatcatcttcggctcgttcttcacactg
aatctctttatcggtgttattatcgacaacttcaatcagcagcagaaaaagataagtggc
caagacatttttatgacagaagaacagaagaaatattacaatgcaatgaaaaagttagga
accaagaagcctcaaaagcccatcccaaggcccctgaacaaatgtcaagcctttgtgttc
gacctggtcacaagccaggtctttgacgtcatcattctggggcttattgtcttaaacatg
attatcatgatggctgaatctgatggccagtctgacgaagtgaagaaaatctttgatatc
ctcaacatagccttcgtggtcatctttaccgtagagtgtctcatcaaagtctttgctttg
aggcaacactacttcaccaatggctggaacttatttgattgtgtggtcgtggttctttct
atcattagtaccttggtttctggcttggagaacagtaacattcccttcccgcccacgctc
ttcagaattgtccgcttggctcggattggtcgaatcctcagactggttcgggcagcaagg
ggaatcaggacgctcctttttgctttgatgatgtctctcccctctctcttcaacattggc
ctgctgctctttctggtgatgttcatttacgccatctttgggatgagctggttttccaaa
gtgaagaagggctctgggatcgacgacatcttcaactttgaaaccttttcgggcagcatg
ctctgtctcttccagataaccacttcagccggctgggatactctcctcaaccccatgctg
gattcaaacgaccactgcaactcctcctcctcctcctcccaagacagttgtcagcagcca
tggatcgccatagtctactttgtcagctacatcatcatctcctttctcattgtggtcaac
atgtacatagctgtgattctggagaacttcaatacagccacggaggagagcgaggacccc
ctgggggaagacgactttgaaatcttctatgagatctgggagaagtttgaccccgaagca
acacagttcatccagtactcggccctctccgactttgccgacgccctgccggagccactg
cgcgtggccaagcctaataagtttcagttcctcatgatggacttgcccatggtgacgggc
gatcgcctccattgcatggatgttctctttgctttcactaccagggtcctcgggaactcc
agcggcttggataccatgaaagccatgatggaggagaagttcatggaggccaatcctttt
aagaagttgtacgagcccatagtcaccaccaccaagagaaaggaggaggagcagtgtgcc
gccgtcatccagagggcctaccggaaatacatggagaagatgatcaagctgaggctgaaa
gacgggtcaggttcatccctccaggtgttttgcaatggggacttgtctagcttggatgtg
ggcaaggtcaaggttcattatgactga
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integrated database retrieval system
