Arvicanthis niloticus (African grass rat): 117693401
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Entry
117693401 CDS
T08817
Symbol
Cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117693401 (Cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117693401 (Cnot10)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117693401 (Cnot10)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
ARM_TT21_N
TPR_19
TPR_14
ARM_TT21
TPR_12
TPR_8
TPR_7
TPR_MalT
DUF6058
TPR_17
Motif
Other DBs
NCBI-GeneID:
117693401
NCBI-ProteinID:
XP_034339915
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Position
21:complement(34985662..35034879)
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AA seq
744 aa
AA seq
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MAADKPADQGAEKHEGAGQSSGVTDQEKELSTSAFQAFTSGNYDACLQHLACLQDINKDD
YKIILNTAVAEFFKNNQTTTDNLRQTLNQLKNQVHSAVEEMDGLDDVENSMLYYNQAVIL
YHLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTHQAEKALHLLAVLEKMIS
QGSSSKNGKNETGNNSSKDSSNPKAESAALIEAAKSKIHQYKVRGYIQMKSLKACKREIK
SVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGFMKTGECLRCMFWNNLG
CIHFAMSKHNLGIFYFKKALQENDNVCAQLSACSTDPGKKFSGRPMCTLLTNKRYELLYN
CGIQLLHIGRPLAAFECLIEAVQVYHANPRLWLRLAECCIAANKGTSEQETKGLPTKKGI
VQSIVGQGYHRKIVLASQSIQNTVYNDGQSSAIPVASVEFAAICLRNALLLLPEEQQDPK
QENGSKSSSQLGGNAESSESSETCSSKSHDGDKFIPAPPSSPLRKQELENLKCSILACSA
YVALALGDNLMALHHADQLLQQPKLSGSLKFLGHLYAAEALISLDRISDAITHLNPENVT
DVSLGISSNEQDQGSDKGENEAMESSGKRAPQCYPSSVNSARTVMLFNLGSAYCLRSEYD
KARKCLHQAASMIHPKEVPPEAILLAVYLELQNGNTQLALQMIKRNQLLPSVKAHSDVRK
KTVFQPVHPIQPIQMPAFSTVQRK
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacaagcctgcagatcagggagcagagaaacatgaaggggcaggccagtca
tctggggtcactgaccaggagaaggagctgtccaccagtgctttccaggccttcacatct
ggaaattatgatgcctgtctgcaacaccttgcctgtctccaagatataaacaaagatgat
tacaaaattattctgaatacagcagtagctgaattttttaaaaataatcaaacaacaaca
gataatttgagacaaacacttaaccagctgaagaatcaggtccactcagctgtcgaagag
atggacggattagacgatgttgagaatagcatgctgtattataaccaagcagtcatcctc
tatcatctgcggcagtacacagaggccatatctgttggtgaaaaactttatcagttcatt
gaacctttcgaagaaaaatttgcccaagcagtgtgctttctgcttgtagacttgtatata
ttaacccaccaagctgagaaagctctgcatcttcttgccgtcctagaaaaaatgatttca
cagggtagcagcagcaaaaatgggaagaacgagactggcaataacagcagcaaagacagc
tccaaccccaaggctgagagtgcagctctaatagaggctgccaagtccaagatacaccag
tacaaagtcagagggtacatccagatgaagtccctgaaggcatgcaaaagggaaatcaag
tctgtcatgaacacagctggaaattctgcaccttccctgtttcttaaaagcaattttgag
tatttaaggggcaattatcgaaaggcggtgaagctgctgaacagttcaaacattgctgag
cacccaggcttcatgaaaacaggtgaatgcttgagatgcatgttctggaataatcttggc
tgtatccattttgccatgagcaagcacaatttggggattttctacttcaagaaggctctg
caggaaaatgacaatgtctgcgcccagctcagtgcgtgtagcactgatccaggcaaaaag
ttttctggaagacccatgtgtacattgctgaccaacaaaaggtatgagctgctgtataac
tgtgggatccagctgctgcatatcgggaggcctcttgctgcctttgagtgtcttattgaa
gctgttcaggtgtatcatgcgaatcctcgtctttggctacgactggctgagtgttgcatt
gctgccaataaagggacctctgagcaagaaactaaaggtcttcccaccaaaaagggaatt
gtacagtctattgttggtcaaggatatcaccggaaaattgttttggcatcacagtctatt
cagaacactgtctacaatgatggacagtcttcagccattcctgtagccagtgtggagttt
gcagccatctgtctcagaaatgccttgttgctgttacctgaagaacagcaagatcccaaa
caggaaaatggctccaagagcagcagccagcttggagggaacgcagaaagcagcgagagc
agtgagacgtgcagcagtaaaagccatgatggagataagttcattcctgctccaccgtct
tctccgctgaggaaacaggaattagaaaacctcaagtgctccatccttgcttgcagtgct
tacgtggctctggccttaggtgataacctcatggctttgcaccatgcagatcagctcctg
cagcagcccaagctgtctggctctcttaaatttttgggccatttatatgccgcagaagcc
ctcatctccctggacagaatatctgatgccattacgcacttgaacccagagaatgtcact
gatgtctccttagggatctcctcaaatgagcaggaccaaggatcagacaagggtgaaaat
gaagcaatggaatcctctggcaagcgtgcccctcagtgctaccccagttctgtcaactct
gcccggactgtgatgctcttcaacctgggcagtgcatactgcctgaggagcgagtacgac
aaggcccggaaatgtctacatcaggcggcatcaatgatccatcctaaagaggtgcctcct
gaggccatcctgctagccgtctaccttgagctgcagaacggtaacacgcagctggccttg
cagatgatcaagaggaaccagctgctcccttcggtaaaagcacactctgatgtgaggaag
aagacagtgttccagcctgtgcaccccatccagcccatccaaatgccggctttcagcacc
gtgcagaggaagtga
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