Arvicanthis niloticus (African grass rat): 117693698
Help
Entry
117693698 CDS
T08817
Symbol
Trpc1
Name
(RefSeq) short transient receptor potential channel 1 isoform X1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04360
Axon guidance
anu04724
Glutamatergic synapse
anu04726
Serotonergic synapse
anu04929
GnRH secretion
anu04972
Pancreatic secretion
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
117693698 (Trpc1)
09154 Digestive system
04972 Pancreatic secretion
117693698 (Trpc1)
09156 Nervous system
04724 Glutamatergic synapse
117693698 (Trpc1)
04726 Serotonergic synapse
117693698 (Trpc1)
09158 Development and regeneration
04360 Axon guidance
117693698 (Trpc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
anu04040
]
117693698 (Trpc1)
Ion channels [BR:
anu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117693698 (Trpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
LHD_TRPY1
MTR4-like_stalk
RIN1
Motif
Other DBs
NCBI-GeneID:
117693698
NCBI-ProteinID:
XP_034340309
LinkDB
All DBs
Position
21:complement(16211048..16257098)
Genome browser
AA seq
809 aa
AA seq
DB search
MGAPPPSPGLPPSWAAMMAALYPSTDLSGVSSSSLPSSPSSSSPNEVMALKDVREVKEEN
TLNEKLFLLACDKGDYYMVKKILEENSSGDLNINCVDVLGRNAVTITIENESLDILQLLL
DYGCQSADALLVAIDSEVVGAVDILLNHRPKRSSRPTIVKLMERIQNPEYSTTMDVAPVI
LAAHRNNYEILTMLLKQDVSLPKPHAVGCECTLCSAKNKKDSLRHSRFRLDIYRCLASPA
LIMLTEEDPILRAFELSADLKELSLVEVEFRNDYEELARQCKMFAKDLLAQARNSRELEV
ILNHTSSDEPLDKRGLLEERMNLSRLKLAIKYNQKEFVSQSNCQQFLNTVWFGQMSGYRR
KPTCKKIMTVLTVGIFWPVLSLCYLIAPKSQFGRIIHTPFMKFIIHGASYFTFLLLLNLY
SLVYNEDKKNTMGPALERIDYLLILWIIGMIWSDIKRLWYEGLEDFLEESRNQLSFVMNS
LYLATFALKVVAHNKFHDFADRKDWDAFHPTLVAEGLFAFANVLSYLRLFFMYTTSSILG
PLQISMGQMLQDFGKFLGMFLLVLFSFTIGLTQLYDKGYTSKEQKDCVGIFCEQQSNDTF
HSFIGTCFALFWYIFSLAHVAIFVTRFSYGEELQSFVGAVIVGTYNVVVVIVLTKLLVAM
LHKSFQLIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNIIPSPKTICYMISSLSKWICS
HTSKGKVKRQNSLKEWRNLKQKRDENYQKVMCCLVHRYLTSMRQKMQSTDQATVENLNEL
RQDLSKFRNEIRDLLGFRTSKYAMFYPRN
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgggggccccgcctccgtctcctggcctgcccccgtcctgggccgcgatgatggcggcc
ctgtacccgagcaccgacctctcgggcgtctcctcctcctccttgccttcctccccatcc
tcctcatcgcccaacgaagtgatggcgctgaaggatgtgcgagaggtgaaggaggagaac
accttgaatgagaagcttttcttgctggcgtgcgacaagggtgactattatatggttaaa
aagattttggaggaaaacagttcaggtgacttgaacataaattgcgtagatgtgcttggg
agaaatgctgttaccataactattgaaaacgaaagcttggatatactgcagctgcttttg
gactacggttgtcagtccgcagatgcacttttggtggcaatcgactctgaagtagtggga
gctgttgatatactacttaatcatcggccaaaacgatcatcaagaccaaccattgtaaaa
cttatggaacgaattcagaatccagaatattcaacaacgatggatgttgcacctgttatt
ttagctgctcatcgtaataactatgaaatccttacaatgcttttaaagcaggatgtatct
ttgcccaagccccatgctgttggctgtgaatgcacgctgtgttctgcaaaaaacaaaaag
gacagcctcaggcattccaggtttcgtcttgatatctatagatgtctggccagtccagct
ctaataatgttaacagaggaggatccaattctgagagcatttgaacttagtgctgactta
aaggaactcagccttgtggaggtggaattcaggaatgattatgaagagctagctcgtcag
tgcaaaatgtttgctaaagatttgcttgcacaagcccggaattctcgtgaactggaagtt
atcctaaaccatacatctagtgatgagcctcttgacaaacggggactactagaagaaaga
atgaatctaagtcgtctgaaacttgctatcaaatacaaccagaaggagtttgtctcccag
tcaaattgccagcagttcctgaacactgtttggttcggacagatgtcaggttaccgccgt
aagcccacctgtaagaagataatgactgttttgacagttggcatcttctggccagttttg
tcactatgttatttgatagctcccaaatctcaatttggcagaatcattcacacacctttc
atgaagtttattattcatggagcatcgtatttcacattcctgctgttactaaatctctac
tcacttgtctacaatgaagacaagaaaaatacaatggggccagcccttgagaggatagac
taccttctcatactgtggattattgggatgatttggtcagacattaagagactgtggtat
gaagggttggaagactttttggaagaatctcgtaaccagctcagctttgttatgaattcc
ctttacttggcaacctttgccctcaaagtggtggctcacaacaagtttcatgactttgct
gaccggaaggactgggatgcattccaccccacacttgtagcagaagggctgtttgctttt
gcaaacgttctgagttaccttcggctcttctttatgtatacaaccagctctattttgggc
ccactgcagatttcgatgggacagatgttacaagattttgggaaatttctgggaatgttc
cttctggttctgttctctttcacaattggactgacacagctctatgacaaagggtacact
tcgaaagagcagaaggactgtgtgggcatcttctgtgaacagcaaagcaacgataccttc
cactcgtttattggcacctgctttgctctgttctggtacatcttctccttagcgcacgtg
gccatctttgtcaccaggtttagctatggggaagaactgcagtccttcgttggagctgtg
attgttggaacgtacaatgttgtggttgtgatcgtgctcacgaagctgctggtggcaatg
cttcacaagagctttcagctgatagcaaatcatgaggataaagaatggaagtttgctcga
gcaaagctatggcttagctactttgatgacaaatgtacactgcccccacctttcaacatt
attccttctccaaagacgatctgctatatgatcagtagcctcagcaagtggatttgctcg
catacctcaaaaggcaaggtcaaacgtcaaaacagtttaaaggagtggagaaatttgaag
caaaagagagacgagaactaccagaaagtgatgtgctgcctcgtgcaccggtacctgacg
tccatgcgacagaagatgcagagcacagaccaggccaccgtggagaatctcaatgaactg
cgccaagacctgtcaaaattccgaaatgaaataagggatttgcttgggtttcggacttct
aaatatgctatgttttatccaagaaattaa
DBGET
integrated database retrieval system
