Arvicanthis niloticus (African grass rat): 117693949
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Entry
117693949 CDS
T08817
Symbol
Pcdh19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K16499
protocadherin delta 2
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117693949 (Pcdh19)
Cell adhesion molecules [BR:
anu04515
]
Cadherins
Protocadherins
117693949 (Pcdh19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
117693949
NCBI-ProteinID:
XP_034340556
EnsemblRapid:
ENSANLG00005021342
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Position
X:complement(80067023..80164309)
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AA seq
1098 aa
AA seq
DB search
MESLLLPVLLLLAVLWTQAAALINLKYSVEEEQRAGTVIANVAKDAREAGFAMDTRQASA
FRVVSNSAPHLVDINPSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIK
DLNDNAPSFPAAQIELEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKT
RGDGSRFAELVVEKSLDRETQSHYSFRITALDGGDPPHMGTVGLSIKVTDSNDNNPVFGE
STYSVSVPENSPPNTPVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTV
AGELDFEEGHVYELDVQAKDLGPNSIPAHCKVTVSVLDTNDNPPIINLLSVNSELVEVSE
SAPPGYVIALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYN
LTIQARDSGVPMLQSAKSFTVRITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDP
DMGLNGSVSYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGL
PSLQSNATVRVIILDVNDNTPVITAPPLINGTAEVYIPRNAGIGYLVTVVKADDYDEGEN
GRVTYDMTEGDRGFFEIDQVNGEVRTTRTFNENSKASYELIVVAHDHGKTSLSASALILI
YLSPALDAQESMGSVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCRIAEY
SYGHQKKSSKKKKISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRR
SESTFLNVENQNTRNTTASHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRA
HLIKSSSTFKDLEGNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMP
DHDQNEGFHCREECRILGHSDRCWMPRNPMPTRSKSPEHVRNIIALSIEATAADVEAYDD
CGPTKRTFATFGKDVSSHRAEERPILKGKRTVNVTICSPKVNSAIREAGNGCESLSPVTS
PLHLKSPLPTKPSMSYTVVLAPPAHDLEHHANNGASRPSEAEPRGADSEKVMHEVNPILK
EGRDKESPGVRRLKDIVL
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggagtctctcctgctgccggtgctactgctgctggctgtactgtggacccaggcggcc
gccctgattaacctaaaatactcggtcgaagaggagcagcgcgccgggacggtaatcgct
aatgtggccaaggacgctcgggaggcaggcttcgcgatggatacccgacaggcttctgct
ttccgcgtggtgtccaactcggctccgcacctggtggacatcaaccccagctcgggcctc
ttggtcactaagcagaagattgaccgagacctcctgtgccgccagagccccaagtgtatt
atctccctagaggtcatgtccagctcaatggagatctgtgtgattaaggtggagatcaaa
gacctgaacgacaatgctcccagttttccggccgcacagattgagctggagatctccgag
gcagccagccccggcacgcgcatcccactggacagcgcatatgacccggactcaggcagt
tttggtgtgcagacctacgagctcacgcccaacgagctgtttggcctggaaataaagacg
cggggtgacggttcgcgctttgctgaactggtagtggagaagagcctggaccgtgagaca
cagtcacattacagctttcgcattacggcgctcgacggaggcgacccaccacacatgggc
acagttggcctcagcatcaaggtgaccgactcgaatgacaacaacccggtgtttggcgag
tccacttactcagtgagcgtgcctgaaaactcacctcccaatacacccgtcatccgcctc
aatgccagcgatccagatgagggcaccaacggccaagtggtctactctttctatggttat
gtcaatgaccgcacgcgtgaactcttccaaattgacccgcacagcggcctggtcactgtc
gccggtgagctagactttgaagagggccacgtatacgaactggatgtgcaagccaaagac
ctggggcccaactctatccctgcacactgcaaagtcactgtcagcgtgctagacactaat
gacaaccccccaattatcaacctactgtcggtcaatagcgagcttgtcgaggtgagcgag
agcgcccccccgggttacgtgattgccctggttcgggtgtctgatcgggactcgggtctc
aatggacgtgtgcagtgccgcttgctgggcaatgtcccctttcggctgcaggagtatgag
agcttctccactattcttgttgatgggcggctggatcgagagcagcatgaccagtacaat
cttactattcaggctcgagacagcggtgtgcctatgctgcaaagtgccaagtctttcact
gtgcgtatcacagacgagaatgacaaccacccacacttctccaagccttactatcaagta
attgtacaggagaacaacactcctggcgcctatctgctctctgtgtctgcccgcgaccct
gacatgggtctcaatggcagcgtctcctaccaaattgtgccatcacaggtgagagacatg
ccagtcttcacctatgtctctatcaatcccaactctggtgacatctatgcgctaagatcc
tttaaccatgagcagaccaaggcatttgaattcaaggtcctggccaaggatggcggcttg
ccctcactccaaagcaatgccacagtgagggtcattatcctagacgtcaacgacaatacc
ccggtcatcacggccccacctctgatcaatggcactgccgaggtctacattcctcgaaac
gcaggcataggctatttggtgactgtagttaaggcagacgattatgatgagggagaaaat
ggccgagtcacctatgacatgacagaaggtgaccgaggtttcttcgaaatagaccaggtc
aatggagaagtcagaaccactcgcacctttaatgagaattccaaggcttcctatgagctt
atagtggtggcccatgaccatggcaagacatctctttcagcgtctgcccttatcctaatc
tacctatccccagctctggatgcccaagagtcaatgggctctgtgaacttatctctgatt
ttcattatcgctctgggctccattgccggcattctctttgtcactatgatcttcgtggca
atcaagtgcaagcgtgacaacaaagagatccggacctacaattgcagaatcgctgagtac
tcctatgggcatcaaaagaaatcaagtaagaagaaaaaaattagtaagaatgacatccgc
cttgtacctcgggacgtggaggagacagacaagatgaatgttgtcagttgctcctccctt
acttcgtccctcaactatttcgactaccaccagcagacactgcccctgggctgccgtcgc
tctgagagcactttcctgaatgtggagaaccagaatacccgcaacactactgccagccac
atctaccatcactccttcaacagccagggcccacagcagccagacctgatcatcaatggt
gtgcccctgcctgagactgaaaactattcttttgactctaactacgtgaatagccgcgcc
catttaatcaaaagcagctccaccttcaaggacctagagggcaacagcctgaaggatagt
gggcatgaggagagtgaccagactgacagtgagcatgatgtccagaggagcctgtactgc
gatactgctgtgaatgatgttctgaacaccagtgtgacctccatgggatctcagatgcct
gaccatgaccagaatgaaggatttcattgcagggaagaatgccggattcttggccactct
gatagatgctggatgccccggaatcccatgcccactcgctccaagtctcctgagcacgtg
aggaacatcatcgctctgtccattgaagctactgctgctgatgttgaggcttacgacgac
tgcggccccaccaagcggactttcgcgacctttggaaaagatgtcagtagccaccgggct
gaggagcgacccatcctgaaaggcaagcggactgtcaatgtgaccatctgcagccccaaa
gtcaacagcgctatccgggaggccggcaatgggtgtgaatctcttagccctgtcacctct
ccactccatctgaagagccctctgcccaccaagccttccatgtcttacacggtcgtcctg
gctcctcctgctcatgatctggagcaccatgccaacaatggcgcctctcgtccttctgaa
gctgagccccgtggagccgacagtgagaaagtcatgcatgaggtcaaccctattctgaag
gaaggtcgtgacaaggaatctcctggcgtgaggcgtctgaaggatatcgttctctaa
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