Arvicanthis niloticus (African grass rat): 117694180
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Entry
117694180 CDS
T08817
Symbol
Thoc2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03013
Nucleocytoplasmic transport
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117694180 (Thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
117694180 (Thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117694180 (Thoc2)
03041 Spliceosome [BR:
anu03041
]
117694180 (Thoc2)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117694180 (Thoc2)
Spliceosome [BR:
anu03041
]
Complex C
Other components
EJC/TREX
117694180 (Thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117694180 (Thoc2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
117694180
NCBI-ProteinID:
XP_076774618
LinkDB
All DBs
Position
X:complement(102561741..102670707)
Genome browser
AA seq
1621 aa
AA seq
DB search
MAAAAVVVPAEWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGN
LKHEQASSVLNDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSD
TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELG
QDLSGNITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCE
PQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCIMDEYK
REIVEAKQIVRKLTMVVLSSEKLDERDKEKDKDDEKVEKPPDNQKLGLLEALLKIGDWQH
AQNIMDQMPPYYAASHKLIALAICKLIHITVEPLYRRVGVPKGAKGSPVSALQNKRAPKQ
VESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVIL
SCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNGHPLLVK
VKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDS
LKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIDLAGL
LQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIR
NTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQF
GGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGS
KQQHKVHKYITSCELVMAPVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYE
REVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQMEHVQRVLQRLKLEK
DNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDRV
FSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRATYEKECGNYPGFLTILRATGFD
GGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNL
GQALERRVNKICQEEKEKRPDLYALAMGYSGQLKSRKSHMIPENEFHHKDPPPRNAVASV
QNGPGGGTSSSSVGSASKSDESGAEETDKSRERSQCGTKAVNKASSTTPKGNSSNGNSGS
NSNKAVKENDKEKVKEKEKEKKEKTPATTPEARVLGKDSKEKPKEERPNKDDKARETKER
TPKSDKEKEKFKKEEKAKDEKFKTTVPSVESKSTQEREREKEPSRERDVAKEMKSKENVK
GGDKTPVSGSLKSPVPRSDISEPDREQKRRKIDTHPSPSHSSTVKVTDILPKVPLGSENY
ASSPVISIHFLQDSLIDLKDSSAKLYINHNPPPLSKSKEREMDKKDLDKSRERSREREKK
DEKDRKERKRDHSNNDREVPPDITKRRKEENGTMGVSKHKSESPCESQYPNEKDKEKNKS
KSSGKEKSSSDSFKSEKMDKISSGGKKESRHDKEKIEKKEKRDSSGGKEEKKHHKSSDKH
R
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcggctgtggtggttcccgcagagtggataaagaactgggagaaatcaggg
agaggcgaatttttgcatttatgccggattctcagtgaaaataaaagccatgacagttcg
acctacagagattttcaacaagctctctatgagttgtcataccatgtcattaaaggaaat
ttaaagcacgaacaggcatctagtgttcttaatgacattagcgaattccgtgaggatatg
ccttctattcttgctgacgtgttttgcatattagatattgagacaaattgtttagaagaa
aaaagcaagagagactattttacacaattggtattagcatgtttgtatttagtttcagac
acagttctgaaggaacgattggatccagaaacattggaatcattagggcttatcaaacag
tcacagcagttcaaccaaaagtcagttaaaatcaagacaaaactcttttataagcagcaa
aaattcaatttattaagagaagaaaatgaaggttatgccaagctgattgctgaactgggg
caagatttatctggaaatattaccagtgatttaatattagaaaacatcaaatctttaata
ggatgctttaatctggatcccaatagagttttggatgtcattttagaagtgtttgaatgc
aggccagaacatgatgacttctttatatctttattagaatcttatatgagtatgtgtgaa
ccacaaacactgtgtcatattcttggattcaaattcaagttttaccaggaaccaagtggt
gagacaccctcgtctttgtacagagttgctgcagtccttctgcaatttaatcttattgat
ctagatgatctttatgtgcatctccttccagctgataattgtattatggatgaatacaaa
cgggaaattgtggaagctaagcaaattgtaagaaaactcacaatggtggttctatcttct
gaaaaacttgatgaacgagacaaagaaaaggacaaagatgatgagaaagtagagaagcca
cctgacaaccaaaaacttggtttgttggaagctttgttaaagattggtgattggcagcat
gcacagaacatcatggatcagatgcctccatactatgcagcttcacacaaactaatagct
cttgctatttgcaagctcattcacataactgttgagcctctataccgaagagttggtgtt
cctaaaggtgctaaaggctctcccgttagtgctttgcaaaacaagagagcaccgaagcaa
gtagagagctttgaagatttgaggagggatgtattcaatatgttctgttaccttggtcct
cacctctcacatgatcccattttatttgcaaaagtcgtgcgcataggcaagtcatttatg
aaggagtttcagtctgatggaagcaaacaagaagataaagagaaaacggaagttatcctt
agttgtttacttagcattactgaccaggtattacttccatctctttctttgatggactgc
aatgcttgcatgtctgaggagctctggggaatgtttaagacatttccctatcagcataga
tatcgtctatatggccagtggaagaatgaaacttataatggtcacccacttttagtaaaa
gttaaagctcaaacaatagacagagccaagtatatcatgaagcgtctaaccaaggaaaat
gtgaagccttcaggaagacaaattggcaagctgagccacagcaatccaacaattttgttt
gattatatcttgtcacaaatccagaaatatgataacttaataacacctgtagtagattca
ctgaaatacctcacttcattgaattacgatgtcttggcttattgtatcattgaagcttta
gctaatccagaaaaggagagaatgaaacatgatgacacaaccatctcaagttggctgcag
agtttggctagtttctgtggtgcagtattccgtaaatacccaattgatcttgctggtctt
cttcagtatgtagccaatcaattaaaggcgggcaaaagttttgacctgctaatattgaaa
gaagtggtacaaaaaatggcaggcatcgaaattacagaggaaatgacaatggagcagtta
gaggccatgactggtggggaacagctaaaggctgagggtggttatttcggccagatcaga
aacactaaaaaatcttctcagagattaaaggatgcactactggaccatgatcttgctctt
cctctctgtttgcttatggcacaacagaggaatggggtaatttttcaggagggtggagag
aaacacttgaaacttgtggggaagctctatgaccagtgtcatgataccctagtacagttt
ggtgggtttttagcatccaatctaagtacagaagattatataaaacgagtgccttcaatt
gatgtgctctgtaatgagtttcatacaccacatgatgcagcattttttctgtctaggcca
atgtatgcacaccatatttcgtcaaaatatgatgaacttaaaaaatcagaaaagggaagt
aaacagcaacataaagtccataaatacattacatcatgtgagctggtgatggcgcctgtc
catgaagcagtggtctccttacatgtttccaaagtctgggatgatatcagccctcagttc
tatgctacattttggtcattgacaatgtatgaccttgcagttcctcataccagctatgaa
agagaagtcaataaacttaaagtccagatgaaagcgattgatgacaatcaggaaatgcct
ccaaataaaaagaaaaaagaaaaggagcgttgcacggcccttcaggacaagctccttgaa
gaagaaaagaaacagatggaacatgttcaaagagtacttcagagactgaaactagaaaaa
gacaactggcttttagcaaagtctaccaaaaatgagactatcacaaaatttttacagctg
tgtatatttcctcgatgcattttttcagcaattgatgctgtttattgtgctcgttttgtt
gaattggtacatcaacagaaaactccaaatttttccacacttctctgctatgatcgagtt
ttttctgacataatttatacagttgcaagctgcactgaaaatgaagctagtcgatatggg
agatttctttgctgtatgttagaaacggtgaccaggtggcatagtgatagagccacatat
gaaaaggaatgtggaaactatccaggattccttaccatattacgggcaactggatttgat
ggtggaaataaagctgatcagttagattatgaaaattttcgacacgttgttcacaaatgg
cattacaaactaaccaaggcatcagtacattgccttgagacgggtgaatatactcacatc
aggaatatattgattgtgctaacaaaaatacttccttggtacccaaaagttttgaatctg
ggacaggctttggaaagaagagtgaataaaatatgccaagaagaaaaagagaagaggcca
gatctttatgcattggctatgggctactcggggcaattgaaaagtagaaagtcacacatg
atacctgaaaatgaatttcatcacaaggatcctcctccaaggaatgctgttgccagtgta
caaaatgggcctggtggtgggacttcatcatcatctgtaggaagtgcatctaaatcagat
gaaagcggtgctgaggagactgataaatcaagggagagatctcagtgtggtacaaaagct
gttaataaggcttctagtaccacaccaaaagggaattcaagtaatggaaatagtggctct
aacagcaataaagctgttaaggaaaatgacaaagaaaaagtaaaagagaaagaaaaagag
aaaaaagagaagactccagctacaactccagaggccagggtacttggtaaagatagtaaa
gaaaaaccgaaggaagagcggccaaataaagatgacaaagcaagagagacaaaggaaaga
acacctaaatctgacaaagagaaagagaagttcaagaaggaagaaaaagctaaagatgag
aaattcaagaccaccgtccccagcgtagaatcaaaatcgactcaagaaagggaaagagaa
aaggagccatccagagaaagagatgtagcaaaggaaatgaagtcaaaggaaaatgttaaa
ggaggagacaaaacaccagtttcagggtccttgaagtcacctgttccccgatcagatatc
tcggagcctgacagggaacaaaaacgccgcaaaattgatactcatccttctccatcacat
tcctccacagtaaaggttacagacatacttcccaaagttcctctgggttctgagaactat
gccagctcacctgtcatctccattcattttctacaggacagtctcatcgatctcaaggac
tcttcagcaaagctctacattaaccataatcctccaccactgtccaagagtaaggagaga
gaaatggacaagaaagatttggacaagtcaagggaaagatccagagaaagagagaaaaaa
gatgaaaaggacaggaaagagcggaaaagggatcattcaaacaatgaccgtgaagtgcca
ccggacataacaaagaggcggaaagaggagaatggaacaatgggggtttcaaaacacaaa
agtgagagtccatgtgagtctcaatatccaaatgagaaagacaaagagaaaaataagtca
aaatcttcaggcaaagaaaaaagcagtagtgattcgtttaaatctgagaagatggataaa
atctcctctggtggcaaaaaggaatccaggcatgataaagaaaagatagaaaagaaagaa
aaacgggatagttcaggaggaaaggaagagaagaaacatcataagtcctctgacaagcac
agataa
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