KEGG   Arvicanthis niloticus (African grass rat): 117694384
Entry
117694384         CDS       T08817                                 
Symbol
Col4a6
Name
(RefSeq) collagen alpha-6(IV) chain
  KO
K06237  collagen type IV alpha
Organism
anu  Arvicanthis niloticus (African grass rat)
Pathway
anu04151  PI3K-Akt signaling pathway
anu04510  Focal adhesion
anu04512  ECM-receptor interaction
anu04820  Cytoskeleton in muscle cells
anu04926  Relaxin signaling pathway
anu04933  AGE-RAGE signaling pathway in diabetic complications
anu04974  Protein digestion and absorption
anu05146  Amoebiasis
anu05165  Human papillomavirus infection
anu05200  Pathways in cancer
anu05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:anu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    117694384 (Col4a6)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117694384 (Col4a6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117694384 (Col4a6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117694384 (Col4a6)
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    117694384 (Col4a6)
  09154 Digestive system
   04974 Protein digestion and absorption
    117694384 (Col4a6)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    117694384 (Col4a6)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    117694384 (Col4a6)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    117694384 (Col4a6)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    117694384 (Col4a6)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    117694384 (Col4a6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:anu04147]
    117694384 (Col4a6)
   00536 Glycosaminoglycan binding proteins [BR:anu00536]
    117694384 (Col4a6)
Exosome [BR:anu04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   117694384 (Col4a6)
Glycosaminoglycan binding proteins [BR:anu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117694384 (Col4a6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 117694384
NCBI-ProteinID: XP_034341155
LinkDB
Position
X:complement(87377817..87677753)
AA seq 1695 aa
MHPGLWLFLVSLCLTKELAEAGQKMSYGKPCGDQDCSRGCTCFPEKGARGHPGPIGTQGP
AGPEGFSGPTGLSGLKGERGSPGPLGPYGSKGDKGPIGVPGFVGINGIPGHPGQPGRRGP
PGLDGCNGTQGTVGFPGPDGYPGILGPPGLPGHKGAEGEPAPFQGSITGMRGDPGLPGLD
GIPGPLGFPGSPGDAGPIGPPGLQGPPGPPGLLGPDGNMGLGFQGEKGVKGDVGLPGPAG
PPPSTGELEFMGFPKGKKGSKGEPGPPGLPGKSGSPGVPELGSIGEKGERGILGLPGPRG
PMGSEGIQGHPGIQGKKGTSGFPGTNGFPGIKGEKGAIGVRGPDSYTDADGAAISGYPGD
PGMPGLPGLRGDEGIQGQRGPSGTPGLPSLTGLPGALGPQGFPGLKGDQGNSGRTTFGEA
GLPGRVGLPGLPGLPGPSGPPGRTFETGPLPNIEPGFPGLQGEQGPKGHQGLKGVKGDSG
FCACEGGAPNIGPHGEPGLPGIQGPIGLQGIKGTRGDPGSSGTSGPAGTPGLFGPRGQTG
LKGKKGEPTVSRGSKMSGDKGDPGPQGTPGLAGVPGKDGIPGLPGLPGIQGDGGSGFPGE
RGLPGLPGEKGHDGPTGPPGIGLPGFPGPPGLPGDKGVDGLPGQQGFRGAQGVTLPCIIP
GSYGPSGFPGAPGFPGSKGARGVPGIPGKPGTHGSKGGPGSPGLIHLPGLPGFPGARGEK
GLPGFPGLPGKDGYPGKAGSPGLPGSKGAAGDIFGAENGASGEQGLQGLPGDKGFSGDSG
LPGPKGLNGKPGMLGPKGERGNPGTSGPPGQPGPSGSTDPFGIKGTSGLPGAPGLPGISG
HPGKKGQRGDIGHPGSTGKRGLPGIKGLPGPQGSAGFQGSPGLSGVTGLPGIPGQKGEKG
SSGPVGFPGLPGLPGLPGADGLKGFSGLFGKVGQPGQAGTPGEKGDRGDPGPVGMSGPRP
PMLNLWFKGEKGSQGSAGSDGFPGPRGDKGEPGIPGLPGPPGAPGQSNTIKGLSGRPGSP
GSMGRRGLPGLKGSLGIAGFPGMPGKSGSQGLIGTSGPLGATGIPGLKGDQGQTLGISGS
PGPKGQPGELGFKGVKGKDGLSGDRGYPGNKGDDGKVGIAGDPGFPGSPGRQGSSGMNGD
PGLPGSSGQPGSIGRPGPSGLIGAKGFPGPPGLHGLNGLPGTKGTHGTPGASITGVPGPA
GLPGPKGERGVPGIVNGDPGKQGSRGQKGDQGSPGLQGPAGTPGAPGISLPSVIAGQPGD
PGRPGLDGERGRPGLPGPPGPPGPSSDQGDPGDSGFPGIPGLQGFKGNQGHPGSSGLSGD
LGLKGMRGEPGLMGTPGKIGPPGDPGFPGMKGKAGPRGFSGPQGAPGHTPIAEAMQVPPG
PLGLPGIDGIPGLTGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPGPSGILGDPGLPGLQG
PPGFEGAPGNQGPIGQPGMPGHNVRVGYTLVKHSQSEQVPLCPIGMSRLWVGYSLLFVEG
QEKAHNQDLGFAGSCLPRFSIMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVGQTQ
IPQYISRCSVCEAPSQAIAVHSQDITVPQCPLGWHSLWIGYSFLMHTAAGAEGGGQSLVS
PGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERGQFREDPVSETLKTGQLHTR
VSRCQVCMKSLSHSL
NT seq 5088 nt   +upstreamnt  +downstreamnt
atgcaccctggattgtggctgttcctggtttccttatgcttgaccaaagaactggcagaa
gcgggacagaagatgtcctatggaaagccatgtggggaccaagattgcagtagaggctgt
acatgctttcctgagaaaggagcaagagggcaccctggaccaattggaactcaaggtcca
gccggtcctgaagggttttctggtccaactggtttatcagggttgaaaggagaaagaggc
tccccaggccctctgggaccatatggatcaaaaggagataagggtcccattggagttcct
ggctttgttggcatcaatgggattccgggccaccctggacaaccaggtcgaagaggtcca
cctggcctagatggctgtaatggaactcaaggaactgttggatttccaggccctgatggt
taccctgggattttaggaccacctgggctgcctggtcacaaaggtgcagaaggagaacct
gctccctttcaaggcagcatcacaggaatgaggggggatcctgggctgcctggactggat
ggaatccctggtccattaggattccccggatctcctggagatgcaggacccataggacca
ccaggcttacaaggtcccccaggcccccctggacttctgggtcctgatggaaatatgggg
ttaggtttccaaggagaaaagggagtcaagggggatgttggcctccctggccctgcagga
ccacctccatctactggggaactagaattcatgggattccccaaagggaagaaaggttcc
aagggtgaaccagggcctccaggtctcccaggcaagagtggctctccaggtgtcccagaa
cttggatctattggagaaaaaggagaaagggggatccttggtttgccaggacctaggggt
cccatgggttcagaaggaatacaaggacatccagggatacagggaaagaaggggacttca
ggttttcctgggactaacgggttcccaggaattaagggtgaaaagggagccattggtgtc
cgaggcccagacagttacactgatgcagatggcgctgcgatctcaggctatcccggagac
cctggtatgccaggcctcccaggccttagaggagatgaaggcatccaaggccaacgtggc
ccttctggcacccctggcctcccatcgttaacaggtcttccaggtgccctagggcctcag
ggatttccaggcctgaaaggagaccaaggaaactcaggacgtaccacctttggagaagct
ggcttacccggcagagttggtttgccaggtttaccaggcctgccaggcccatcaggccca
cctggtcgtacatttgagactggacccctgcctaacatagagcctgggttccctggtctc
caaggagaacaaggtccaaaaggacatcaaggcctcaaaggagtgaaaggagactctggt
ttttgtgcttgtgaaggtggtgcccccaacattggaccacatggggaaccaggcctgcct
gggattcaaggtcccattggtctacaaggtattaaagggactagaggagatccaggctct
agcggtacatctggccctgcagggactccagggctatttggacctagaggccagactggc
ctcaaaggaaagaaaggagaaccaactgtcagtagaggatcaaaaatgtcaggagacaaa
ggtgaccctggtcctcaggggaccccaggtttggcaggagttccaggcaaggatggaata
ccaggtttaccaggcctcccaggcattcagggagatggtgggtctggcttcccaggtgaa
agggggttaccaggacttcctggtgaaaagggccatgatggtccaactggaccaccagga
attggtctgccaggatttcctgggccccctggacttcctggagataaaggagtggatggg
ttaccagggcaacaaggcttccgtggagctcaaggagtcaccttgccttgtatcattcct
gggtcatatggtccatcaggatttcctggagctcctggattcccaggttctaagggagct
cggggcgtccctggaattccaggcaagcctggcactcatggaagcaaaggagggcctgga
agtccagggttaatacatctcccaggattgccaggatttcctggagctcgtggggagaag
ggattgcctgggtttcctgggcttcctggaaaggatggctaccctgggaaagctggcagt
ccagggttaccaggttccaagggagctgctggtgacatctttggtgctgaaaatggtgct
tcaggggagcaaggcctacagggattgccaggggacaaaggattttctggagactctggc
cttccaggacccaagggtttgaatgggaaacctggtatgctaggccctaagggtgagcga
ggcaaccctggaacatcaggaccaccaggacagccaggaccctcagggtctactgatcca
tttggcatcaagggcacatctggactcccaggagcaccgggccttccaggcatttcaggg
catcctggaaagaagggtcaaagaggagacataggtcaccctgggtcaactggaaaacga
ggtctacctgggataaaaggccttcctggtcctcaagggtcagctggcttccaggggagc
ccaggtttgtcaggagtcactgggttgccaggcatcccaggtcaaaagggtgaaaagggg
tcctctggaccagtagggtttcctgggttacctggtcttcccggtcttcctggagctgat
ggattaaagggattttccgggttatttggaaaagtgggacaacctggtcaggctggtact
cctggagaaaaaggagacagaggggatccagggccagttggcatgtctggtccaagacct
ccaatgctaaacctttggttcaaaggagaaaaaggctctcaaggttctgctggatcagat
ggatttcctgggcccagaggtgacaaaggagaacctggcatcccagggttaccaggccca
cctggagctcctggacagtccaataccatcaaaggactcagtgggaggccaggttcccct
ggatctatgggaagaaggggattacctggcctgaaggggtctctggggattgcaggtttc
ccaggaatgccagggaaaagtggttcacaggggctcattgggacttctggtcccctggga
gcaactggtatcccaggtttaaaaggagatcaaggccaaacacttggcatttctggaagc
ccaggacccaagggacagcctggtgaattaggttttaaaggtgtcaaaggaaaagatgga
ctaagtggtgatagaggttacccaggaaacaaaggtgatgatggaaaagttggtattgct
ggagatcctggcttccctggctccccaggacgtcaagggtcttcaggtatgaatggagac
ccaggcctcccaggttcctctggccagccaggatcaattggccgccctggaccctctgga
ttaataggagctaaaggattccctggacctcctggtttacatggactgaatggacttcca
ggaaccaagggcacccatggcactccaggagccagtatcactggtgtccctgggccagct
ggcctgcctggtcccaaaggggaaaggggagtgccaggaattgtcaatggagatccaggg
aaacaaggctcaaggggacaaaaaggtgaccaaggttccccaggtcttcaaggtcctgct
ggtacccccggagccccaggcatctccttgccctcagtcatagcaggacagcctggtgac
cctgggcggccaggcctagatggagaacgaggccgcccaggcctcccaggccctccaggt
ccccctgggccatcctcagatcaaggcgatcctggagactctggcttccctggaattcca
ggccttcaagggttcaagggaaaccaaggacacccaggttcctctggcctctccggagat
ctagggctaaaaggcatgagaggggaacctggcctcatgggaactcctggcaagattggg
ccaccaggagacccgggatttcctgggatgaaggggaaggcagggccaagaggcttttct
ggcccccagggtgctccaggacacacaccaattgctgaagctatgcaagttcctccagga
cccctaggtcttccaggcatcgatggcatcccaggtctcacaggagaccctggatctcaa
ggctctgtgggtctgcaaggttccaaaggcctacctggcatccctgggaaggatggcccc
agtgggcttccaggcccatctggaatccttggtgatcctggtctccctggactacaagga
cctccaggatttgaaggagctcctggaaatcagggccccattgggcagcctgggatgcct
gggcacaatgtgagagtgggctacacactagtaaaacacagtcaatcagaacaggtgcca
ctatgccccattgggatgagccggctctgggtgggttacagcttgctgttcgtggagggg
caggagaaagcccataaccaggatctgggatttgctggctcctgcctgccccgattcagc
atcatgcccttcatctactgcaacatcaatgaagtgtgccactatgccagacgcaatgat
aaatcctactggctctccactactgcccccattcccatgatgcctgtgggccagacccag
attccccagtatatcagccgctgctctgtatgtgaggcaccctcacaagccattgctgtg
cacagccaggacatcaccgttccacagtgccctctgggttggcacagcctctggatcgga
tattccttcctcatgcacactgctgctggggctgagggtggaggccagtccctagtctcc
cccggctcctgtcttgaggacttccgggccactcctttcatcgagtgcagcggtgcccgt
ggtacctgccactactttgccaacaagtacagtttctggctgacaacggtggaggagaga
gggcagtttcgggaagatcctgtgtctgagacgctgaaaaccgggcagcttcacaccagg
gtgagccgctgccaggtgtgtatgaaaagcctgtcacacagcctctga

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