KEGG   Arvicanthis niloticus (African grass rat): 117694415
Entry
117694415         CDS       T08817                                 
Symbol
Kdm5c
Name
(RefSeq) lysine-specific demethylase 5C isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
anu  Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:anu00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:anu01009]
    117694415 (Kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:anu03036]
    117694415 (Kdm5c)
Enzymes [BR:anu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     117694415 (Kdm5c)
Protein phosphatases and associated proteins [BR:anu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     117694415 (Kdm5c)
Chromosome and associated proteins [BR:anu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    117694415 (Kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID zf-C5HC2 JmjN PHD
Other DBs
NCBI-GeneID: 117694415
NCBI-ProteinID: XP_034341207
LinkDB
Position
X:16756664..16796894
AA seq 1554 aa
MELGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEV
DNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVV
EEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRP
FDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYG
AGPKMMGLGLMAKDKTLRKKDKEGPECPPTVVVKEELGGDVKMESASPKTFLEGKEELSH
SPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPE
IPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTEL
VEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMP
VLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSL
AAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRA
YHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDL
NLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALA
CYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVA
LEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGP
DRVAGLQMTLAELRDFLGQMNNLPCAMHQIGDVKGILEQVEAYQTEAREALISQPSSPGL
LQSLLERGQQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLAIMRGLLVAGASV
APSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQ
SLKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHS
WREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDL
RDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASLTTASSTASICVCGQVPAGVGAL
QCDLCQDWFHGRCVTVPRLLSSQRSSLTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILA
LLVALQRLPVRLPEGEALQCLTERAISWQGRARQVLASEEVTALLGRLAELRQRLQAESK
PEESLAYSSDGGEGTGNMPKVQGLLENGDSVTSPEKVATEEGSGKRDLELLSSLLPQLSG
PVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLKRVQTLLELEKAERH
GSRTRGRALERRRRRKVDRGGEPDDPAREELEPKRVRSSGPEAEEVQEEEELEEETGGEV
PPVPFPNNGSPSTQEDQDGLEPVLEAGSDTSAPFSTLTSRLLMSCPQQPSLQQL
NT seq 4665 nt   +upstreamnt  +downstreamnt
atggagctggggtccgacgatttcctaccgccgccggagtgtccggtgttcgagcctagc
tgggccgagttccgagaccctcttggctacatcgcgaaaatcagacccatcgccgagaag
tccggcatttgcaagatccgcccacccgcggactggcagccaccctttgctgtggaagtg
gacaacttcaggtttactccccgaatccagaggttgaatgagctggaggcccagacaaga
gtgaaactgaactatttggaccagattgccaaattctgggagatccagggctcatcctta
aagattcccaatgtagaacggcggatcttggacctctatagcctcagcaaaattgtggtg
gaagaaggtggttatgaaactatctgcaaggaccgtcgatgggctcgtgtggcccagcgc
ctcaactatccacctggcaaaaacattggttccttgctacgctctcactatgaacgcatt
gtttatccctacgaaatgtaccagtctggagccaaccttgtgcagtgtaacacacgccca
tttgataatgaggaaaaagacaaggagtataaaccccacagcatcccacttcgacagtct
gtacagccttccaagttcaacagttacggacgacgggcaaagagactacagcctgatccg
gaacccacagaggaagacattgaaaagaatccagaactgaagaagctacagatatatgga
gcaggccccaagatgatggggctgggcctaatggccaaggataagactctgcggaaaaaa
gataaagaagggcctgagtgtccccccactgtggtagtaaaggaggaattaggtggggat
gtcaagatggagtcagcctcacccaagaccttcctagaaggcaaggaggaactgagtcac
agccctgagccctgcaccaagatgaccatgaggctgcgaaggaaccacagcaatgcccag
tttattgagtcatacgtatgccgaatgtgttcccggggagatgaagatgacaaactctta
ttgtgtgatggctgtgatgacaattaccacatcttttgcctgctgcctcctttacctgaa
atcccgaaaggtgtctggaggtgtccaaagtgtgtcatggcggagtgtaagcggccccct
gaagcctttggctttgagcaagctacccgggaatatactctgcagagctttggagagatg
gctgactcttttaaagctgactacttcaacatgcctgtgcatatggtacccacagaactc
gtagagaaggagttttggcggcttgtgaatagcatcgaggaagatgtaactgttgagtat
ggggctgacatccattccaaagaatttggcagcggtttccctgtcagtgacagtaagcgg
cacctaaccccagaggaggaggagtatgctacaagtggttggaacctgaatgtgatgcct
gtattggagcagtctgtactatgccacatcaatgcagatatatctggcatgaaggtccca
tggctgtatgtggggatggtgttctcggccttttgctggcatattgaggatcattggagt
tactctattaactacctccactggggtgagccaaaaacctggtatggagtcccatcgctt
gcagcggaacacttggaagaagtgatgaagaagctgacacctgaactttttgatagccag
cctgatctccttcaccaacttgtcaccctcatgaatcccaacactctcatgtctcatggt
gtgccggttgttcgcacaaaccagtgtgcaggagaatttgtcatcacttttcctcgtgct
taccacagtggtttcaaccaaggctacaactttgctgaggcagtcaacttttgcactgct
gactggctgcctgctgggcgccaatgcattgagcactaccgccggctacgaaggtactgt
gtcttttctcatgaggagctcatttgcaagatggctgcctgccctgagaagctggacctg
aacctggcagcagctgtacataaggaaatgttcattatggtgcaagaggagcggcgtcta
cggaaggctctgttggaaaagggtatcactgaggctgaacgagaggcttttgagctgctt
ccagatgatgaacgtcagtgcataaagtgcaagaccacatgtttcctatctgccctggcc
tgctatgattgcccagatggccttgtctgcctttctcacatcaatgacctctgcaagtgc
tctagtagccgccagtaccttcggtatcggtacaccttggatgagctccctgccatgctg
cataaactgaaagttcgagctgagtcctttgacacttgggctaacaaagtacgagtggcc
ctggaggtggaagatgggcggaagcgcagcctggaagaactgagagcactagaatctgag
gctcgtgagcgaaggtttcctaacagtgagcttctacagcgactgaagaattgcctgagt
gaggcagaggcttgtgtgtcccgggctctgggattggtcagtggccaggaagctggcccc
gacagggtggctggtctacagatgaccctggctgagctacgggattttctgggccagatg
aacaacctcccctgtgccatgcatcagattggggatgtcaagggtattctggagcaggtg
gaagcctaccagactgaggcccgtgaggccctgatctcacagccctccagtccagggctg
ctgcagtccctgttggagagagggcagcagctgggtgtggaggtacctgaagcccagcag
ctccaaaggcaggtggaacaggcgcggtggctggatgaggtaaaacgcacgctggctccc
tctgcccgaaggggtaccctggccatcatgcggggactgttggttgcgggtgccagtgta
gcccctagccctgctgtggataaggcccaggcagagcttcaggagctgctgaccatcgct
gaacgctgggaagagaaagctcacctctgcctagaagccaggcagaagcatccaccagcc
acacttgaggccataatccatgaagcagaaaacatccctgttcacctgcccaatatccag
tctctcaaggaagctcttgctaaggcccgggcatggattgctgatgtggatgagatccaa
aatggtgaccactacccttgcttggatgacttggagggcctcgtagctgtgggtcgggac
ctccctgtggggctggaggaactgagacagctagagctacaggtactgacagcacactcc
tggagagaaaaggcctccaagaccttcctcaagaagaactcctgctacacattattggag
gtgctctgcccgtgtgcagacgccggctcagacagcaccaaacgcagccggtggatggag
aaggagctggggttgtacaaatctgacacagagctgttggggctgtctgcgcaggacctc
agggacccaggctctgtgatcgtggccttcaaagagggggagcagaaggagaaggaaggg
atcctgcagcttcgtcgtaccaactcggccaagccaagtccactggcatcattgacaaca
gcctcttctacagcttctatctgcgtgtgtgggcaagtgccagcaggggtgggagctctg
cagtgtgacctgtgtcaggactggttccatgggcgctgtgtgacagtaccccgcctcctc
agctcccagaggtccagtcttacctcatccccactgctggcctggtgggaatgggacacc
aaattcttgtgccctctgtgtatgcgctcacggcgcccacgcttggaaaccatcctggca
ctactggtagccctacagagactgcctgtgcggctacctgagggtgaggctctacagtgc
ctcacagagagagccatcagctggcaaggccgtgccagacaggttttggcctctgaggaa
gtgactgctctgttgggacggctggctgaactccgccaacggctacaggctgaatccaag
cctgaggaatccctggcttactcttcagatggtggagaaggcactggcaatatgcctaag
gtccaggggctgttggagaatggggacagtgtgaccagtcctgaaaaggtagccacagag
gagggctcaggtaagagagatctggagctgctgtcatcgctattaccacagttgtctggc
cctgtgttggaactgcctgaggcaacccgagccccactggaggaacttatgatggaaggg
gatctgcttgaggtgaccctagatgagaatcatagcatctggcagctgctgcaggctggg
cagcctccagacttgaagagggtccagacacttctggagctggagaaggcagagcgccat
gggagtcggacacgaggccgagccttagagaggagacggcggaggaaggtggatcggggt
ggggagcccgatgacccggcacgagaggagctagagccaaagagggtacggagctcagga
ccagaagctgaggaagtccaagaggaagaagagctggaggaggagactgggggtgaggtc
cctcctgtacccttccccaacaatggcagccccagcacccaggaggaccaggatggctta
gaaccagtgttagaggctggttcagacacctcagcccctttctctactctgacttcccgg
ctgttgatgtcctgcccacagcagccatctctgcaacaattgtga

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