Arvicanthis niloticus (African grass rat): 117694578
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Entry
117694578 CDS
T08817
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04613
Neutrophil extracellular trap formation
anu05014
Amyotrophic lateral sclerosis
anu05034
Alcoholism
anu05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
117694578
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
117694578
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
117694578
09165 Substance dependence
05034 Alcoholism
117694578
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
anu01009
]
117694578
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117694578
04131 Membrane trafficking [BR:
anu04131
]
117694578
03036 Chromosome and associated proteins [BR:
anu03036
]
117694578
Enzymes [BR:
anu01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117694578
Protein phosphatases and associated proteins [BR:
anu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117694578
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117694578
Membrane trafficking [BR:
anu04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117694578
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
117694578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
PGC7_Stella
Motif
Other DBs
NCBI-GeneID:
117694578
NCBI-ProteinID:
XP_034341439
LinkDB
All DBs
Position
X:complement(37458047..37461447)
Genome browser
AA seq
1133 aa
AA seq
DB search
MTPTGQDSSTRQQKTXHNPQSPLQDSSATLGAVPDSSPNLAXVKKKGKMKKLSQPAEEDL
IMGLRGLDLNPETRVPVGTGLVFDEQLNDFHCLWDDSFPENPEWLHAIKEQLILEGLLGR
CVTFQARFAEKEELMLVHSLECIDLMETTQYMNEGELRVLTGTYDSVYLHPNVYSCTCLA
TGSVLRLVDAVMGAEIRNGMAVIRPPGHHAQCSLMDGYCMFNHLAVAAHYLQKKHRIQRI
LIVDWGVHHGQGTQFTFDQDPSVLYFSIHHYEHGRFWPHLKASIWSTTGFGQGQGCTLDQ
VGMRDVDYIAAFLHILLPVAFEFQPQLVLVAAGFDALHGAPKGEMSATPSGFAHLTHLLM
GLAGGNLILSLEGGYNLHALAKEVSASLHTLLGDPCPMLKSPVAPCASAQTSISCTLEAL
KPFWEVLEKSVEPQEENEVEGDMLEEEEEERRWEAAALPTDPWPLLQNRTGLVYDERMMT
HCNLWDNHQRILHIMFHLEEVGLAACCLILPSRPATDAELLTCHSAEYVEHLRATEKMKT
RDLHSEGANFDSIYICPSTFACAQLATGTACCLVEAMLSGEVLNGXIVCPPGHHAEPEAA
CGFCFFNSVAVATLHAQGIAGRALRILIVDWDVHHVNGTQHIFEDDPNALYMSLHRYDHG
TFLPMGDEGASSQVGRAAGTGFTVNVPXNGLRMGNADYPALWHCLVLPIAYEFNPELVLI
SAGFDAAKGDPLGGCQVTPEGYAHLTHLLMGLXGGHVILILEGGYNLASISESVAACTHS
LLGDPPSQLTSLRPPQPGALASISEAIQVHRKYWRSLQLMKMEDKEECSSSRHVIKKLPP
TASPVVTKEMTTPKGKVPKLSMQKITTTLPAKESTLGQVKSEMAMAVLAQGQSSEQAAKE
TTLNLATSKETVEGATTDQWASAAATEDLAKQTTSQEVVGRTAPTPPASYASKSSREVSP
LQGATAAPQSLEFVFLRTLELSSEAQEAYESKGLLGEAAGGQDMNSLMLTQAFGDFNAQE
IVYAVTPLPWCPHLMAVCPIPAAGLNVSQPCKTCGTCQENWVCLTCYQVYCSRYVNAHLV
CHHEASEQSLVLSCIDLSTWCYLCQAYVHHQDLQDVKNAAHQKKFGEDMSHSH
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgacccccactggccaagattcttctaccaggcagcaaaagactnagcacaacccccag
tctcctcttcaggactccagcgccaccttgggtgctgtacccgactccagccccaatcta
gcataggtaaagaagaaaggcaaaatgaagaagctcagccaaccagctgaagaagaccta
atcatggggcttcgagggctggatctgaaccctgagacacgagtaccagttggtactgga
ttggtgtttgatgagcagctaaatgacttccactgcctttgggatgacagcttccctgaa
aaccctgagtggctccatgccatcaaagagcagctgatcctggagggcctcctgggccgc
tgtgtgacctttcaggcccggtttgctgaaaaggaggagctgatgttggttcacagcctg
gaatgcattgatctgatggagacaacccaatacatgaatgaaggagaacttcgagtatta
acaggcacctatgattcagtttatctgcatccgaacgtatattcatgtacctgcctggct
acaggctctgtcctcaggctggtagatgcagtcatgggggctgagattcggaatggcatg
gccgttatcaggcctcctggacaccatgctcagtgcagtcttatggatgggtattgcatg
ttcaaccatctggctgtggctgcccactatctgcaaaagaagcatcgaattcagaggatt
ctcatcgtggactggggtgtgcaccatggtcaaggaacacagttcacctttgaccaggac
cccagtgtcctctatttctccatccaccactacgagcatggtcggttctggccccatctt
aaggcttctatctggtccactacaggttttggccaaggacaaggatgtaccttggaccag
gtggggatgcgtgatgttgactacattgctgctttcctgcatatcctcctgccagttgcc
tttgagttccagcctcaactggtcctggtggccgctggatttgatgccctccatggagcc
cccaagggagagatgtctgccactccatcaggatttgcacacctaacccatttgctcatg
ggtttggcaggaggcaacttgattctgtctttagagggtggttataacctccatgcactg
gctaaggaggtcagtgcttcactccacacccttcttggagacccttgccccatgttgaag
tcccctgttgcaccttgtgcaagcgcccagacttccatctcctgcactctagaagccctt
aaacccttctgggaggtccttgagaaatcagttgagccccaagaggaaaatgaagtggaa
ggagacatgctagaagaggaagaggaggaacgccgctgggaggctgctgctctgccaacg
gatccatggccactgctccagaaccgcactgggctggtctatgatgaaaggatgatgact
cactgcaacctatgggacaatcatcagcgcatcttacacatcatgtttcacctggaggag
gtgggtcttgcagcatgctgtctcatcctaccttcccggcctgccacagatgctgagctc
cttacgtgccacagtgctgagtatgtggagcatctccgggccacagaaaagatgaaaacc
agggatctgcacagtgaaggtgccaactttgactccatttacatctgccccagcaccttt
gcctgcgcacagctggccacaggcactgcctgctgcctggtggaagctatgctttcggga
gaggttttaaatggcnnaatagtgtgccctccaggacaccatgcagagccagaagctgct
tgtggtttctgctttttcaattccgtagctgtggctactctccatgcccagggcattgct
ggacgtgcccttcggatcctgatcgtggattgggacgttcatcatgttaatggaactcag
cacatatttgaggatgaccccaatgcattatacatgtccctgcaccggtatgaccatggc
actttcttacccatgggggatgaaggtgccagtagccaagtaggccgggctgcaggtaca
ggcttcactgtcaatgtgccctgaaatgggctccgcatgggtaatgctgattacccggct
ttgtggcattgtctggtacttcccatcgcctatgagtttaacccagaactagtgctcatt
tcagctggctttgatgctgcaaaaggggacccactggggggctgccaagtgacgcctgag
ggttatgcccaccttacccacctgctgatgggccttngcggtggccatgttattcttatt
ctagagggcggatacaacttggcatccatctcggaatctgtggctgcctgcacccattcc
ctccttggagacccaccatcccagcttacttcgctgcgacctccacagccaggagccctg
gcttcaattagtgaggccatccaagtccatcgcaaatactggcgcagtttacagttgatg
aagatggaagacaaggaagaatgctctagttctaggcatgtcatcaagaagctgccccca
actgccagtcctgtggtaactaaggaaatgaccacaccaaaaggaaaggttcccaaatta
agcatgcagaagatcacaaccacattacctgcgaaagagtctactctaggccaagttaaa
tcagagatggccatggcagtgcttgctcagggccagtcctcagaacaagctgctaaggaa
actacactgaacctagccacctcaaaggagactgtggaaggagccaccactgaccagtgg
gcgtcagcagctgctacagaggacttagctaagcaaaccacctcacaggaggttgtggga
agaactgcaccaactcctccagcctcatatgcaagtaagtcaagcagggaagtttcacct
ctgcagggagccacagccgccccgcagtccctggagtttgtgtttctcagaactttggag
ctaagcagtgaggctcaggaggcctatgagtccaagggcctcctaggagaagcagctgga
ggtcaggacatgaacagcttgatgctgacacaagcatttggggactttaatgcccaggaa
atagtttatgctgtgaccccactaccctggtgtccccatttgatggcagtatgccccatt
cctgcagcaggcctaaatgtgtcccaaccttgtaagacatgtggaacatgccaggagaac
tgggtgtgtctgacttgctatcaggtgtactgcagtcgctatgtcaatgcccatttggtc
tgccaccatgaagcctctgaacaatcattggtcctcagctgtattgacctgtctacctgg
tgttatctttgtcaggcttatgtccaccaccaggatctccaagatgtgaagaacgctgcc
caccagaagaagtttggggaggacatgtcccactcacactaa
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