Arvicanthis niloticus (African grass rat): 117696456
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Entry
117696456 CDS
T08817
Symbol
Rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
anu03016
]
117696456 (Rtcb)
Enzymes [BR:
anu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
117696456 (Rtcb)
Transfer RNA biogenesis [BR:
anu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117696456 (Rtcb)
Prokaryotic type
tRNA splicing ligases
117696456 (Rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
117696456
NCBI-ProteinID:
XP_034343250
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARISS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtaactacaacgatgagctacagttcttggacaagatcaataagaactgctgg
aggatcaagaagggctttgtgcccaacatgcaggttgaaggagtgttttatgtgaatgat
gctctggaaaaactaatgtttgaggagttaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaagcagattggcaatgtggcagccctgcctgggattgttcat
cggtctattgggcttcctgatgtccattcaggctacgggtttgccatagggaacatggct
gcctttgatatgaacgaccctgaggcagttgtatccccaggtggtgtcggatttgatatt
aactgtggtgtccgtttgctaagaaccaatttagatgagagcgatgtacagcctgtgaag
gaacagcttgcccaagctatgtttgaccacatccctgttggggtgggatcaaaaggcgtc
attccaatgaatgccaaagacttggaggaggcattggagatgggtgtggactggtccctg
agagaaggctatgcctgggctgaagacaaggaacactgtgaggagtatggaaggatgctg
caagccgaccccaataaggtctcacccagagcaaagaaaaggggccttcctcagttgggg
accctgggagcaggcaaccactatgcagaaatccaggttgtagatgagattttcaatgag
tatgctgccaagaaaatgggcatcgaccacaagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagctacagatgcactggtagctatggaaaaggcc
atgaagagagacaagattatagtcaatgaccggcagttggcgtgtgctcggatctcatcc
ccagaggggcaagactatctaaagggaatggctgcagctggaaactatgcctgggttaac
cgctcttctatgaccttcttaacccgtcaggcttttgccaaagtcttcaacacaacccct
gacgacctggacctgcatgtgatctatgatgtttctcataatatcgccaaagtggagcag
cacgtggtagatggaaaggagcggacgctgctggtgcacaggaagggatccacccgtgct
ttccctcctcaccaccccctcattgctgtggactaccaactcactggacaaccagtgctt
attggtggcaccatggggacttgcagttatgttctgactggcactgaacaaggcatgact
gagacctttggaacaacctgtcatggagcgggtcgtgctttgtccagagcaaaatcacgt
cgtaatttagatttccaagatgtcttagataaactggcagatatgggaatcgcaatccgg
gttgcttcacccaagctggttatggaagaggctccagagtcctataagaatgtgacagac
gtcgtgaacacctgccatgatgctgggatcagcaagaaggccattaaactgagaccaatt
gctgttattaaaggatag
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integrated database retrieval system
