Arvicanthis niloticus (African grass rat): 117697105
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Entry
117697105 CDS
T08817
Symbol
Hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04066
HIF-1 signaling pathway
anu04137
Mitophagy - animal
anu04140
Autophagy - animal
anu04148
Efferocytosis
anu04659
Th17 cell differentiation
anu04919
Thyroid hormone signaling pathway
anu05167
Kaposi sarcoma-associated herpesvirus infection
anu05200
Pathways in cancer
anu05205
Proteoglycans in cancer
anu05208
Chemical carcinogenesis - reactive oxygen species
anu05211
Renal cell carcinoma
anu05230
Central carbon metabolism in cancer
anu05231
Choline metabolism in cancer
anu05235
PD-L1 expression and PD-1 checkpoint pathway in cancer
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04066 HIF-1 signaling pathway
117697105 (Hif1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117697105 (Hif1a)
04137 Mitophagy - animal
117697105 (Hif1a)
04148 Efferocytosis
117697105 (Hif1a)
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
117697105 (Hif1a)
09152 Endocrine system
04919 Thyroid hormone signaling pathway
117697105 (Hif1a)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
117697105 (Hif1a)
05205 Proteoglycans in cancer
117697105 (Hif1a)
05208 Chemical carcinogenesis - reactive oxygen species
117697105 (Hif1a)
05230 Central carbon metabolism in cancer
117697105 (Hif1a)
05231 Choline metabolism in cancer
117697105 (Hif1a)
05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
117697105 (Hif1a)
09162 Cancer: specific types
05211 Renal cell carcinoma
117697105 (Hif1a)
09172 Infectious disease: viral
05167 Kaposi sarcoma-associated herpesvirus infection
117697105 (Hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
anu03000
]
117697105 (Hif1a)
Transcription factors [BR:
anu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117697105 (Hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
DDRGK
HLH
Motif
Other DBs
NCBI-GeneID:
117697105
NCBI-ProteinID:
XP_034343886
LinkDB
All DBs
Position
Unknown
AA seq
828 aa
AA seq
DB search
MEGAGGENEKKNRMSSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASV
MRLTISYLRVRKLLDAGDLDIEDEMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKY
MGLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGPVRKGKEQNTQRSFFLRMKCTLTSRG
RTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDS
KTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQ
VTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTES
VLKPVESSDMKMTQLFTKVESEDTSCLFDKLKKEPDALTLLAPAAGDTIISLDFGSDDTE
TEDQQLEDVPLYNDVMFPSSNEKLNINLAMSPLPASETPKPLRSSADPALNQEVALKLES
SPESLELSFTMPQIQDQPASPSDGSTRQSSPEPNSPSEYCFDVDSDMVNVFKLELVEKLF
AEDTEAKNPFSTQDADLDLEMLAPYIPMDDDFQLRSFDQLSPLESNSPSPPSVSTVTGFQ
QTQLQKPTITATATTTATAATTTDESKTVPKDNIEDIKILIASPSSTQVPQEMTTTAKAS
AYSGAHSRTASPDRAGERVVEQTDTAHPRSLNLSVTLNQRNTVPEEELNPKTIALQNAQR
KRKMEHDGSLFQAAGIGTLLQQPGDRAPATSLSWKRVKGYISSDQDEMEQKTIILIPSDL
ACRLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgccggcggcgagaacgagaagaaaaataggatgagttctgaacgtcgaaaa
gaaaagtctagagatgcagcgagatctcggcgaagcaaagaatctgaagttttttatgag
cttgctcatcagttgccacttccccacaatgtgagctcacatcttgataaagcttctgtt
atgaggctcactatcagttacttacgtgtgaggaaacttctggatgccggtgatctggac
attgaagatgaaatgaaagcacagatgaactgcttttatctgaaagccctggatggcttt
gttatggtgctaacagatgacggtgacatgatttacatttctgataacgtgaacaaatac
atggggttaactcagtttgaactaactggacacagtgtgtttgattttactcatccatgt
gaccatgaggaaatgagagaaatgcttacacacagaaatggcccagtgagaaaagggaaa
gaacaaaacacacagcggagcttttttctaagaatgaaatgcaccctaacgagccggggg
aggaccatgaacatcaagtcagcaacgtggaaggtgcttcactgcacaggccatattcat
gtgtatgataccaacagtaaccaacctcagtgtgggtacaagaaaccacccatgacatgc
ttggtgctgatttgtgaacccattcctcatccatcaaatattgaaattcctttagacagc
aagacatttctcagtcgacacagcctcgatatgaaattttcttactgtgatgaaagaatt
actgagttgatgggttatgagccagaagaacttttgggccgatcaatttatgaatattat
catgctttggactctgatcatctgaccaagactcaccatgatatgtttactaaaggacaa
gtcaccacaggacagtacaggatgcttgccaaacgaggtggatatgtctgggttgaaact
caagcaactgtcatatataatacgaagaactctcagccacagtgcattgtgtgtgtgaat
tatgttgtaagtggtattattcagcacgacttgattttctcccttcaacaaacagaatct
gtcctcaaaccagttgaatcttcagatatgaaaatgactcagctcttcaccaaagttgaa
tcagaagacacaagctgcctttttgataagctgaagaaagaacctgacgctctaactctg
ctagctccggctgctggggacacaatcatatctctggattttggcagtgatgacacagaa
actgaagatcaacaacttgaagatgttccattatataatgatgtaatgttcccctcttct
aatgaaaaattaaatataaatctggcaatgtctccattaccggcctctgaaactccaaag
ccacttcgaagtagtgctgatcctgcactcaatcaagaggttgcattaaaattagagtca
agtccagagtcactggaactttcttttaccatgccccagattcaagatcagccagcaagt
ccttctgatggaagcactagacaaagttcacctgagcctaacagccccagtgaatattgc
tttgatgtggatagcgatatggtcaatgtattcaagttggaactggtggaaaaactgttt
gctgaagacacggaggcaaagaatccattttcaactcaggacgctgacttagacttggaa
atgctggctccctatatcccgatggatgatgacttccagctacgttccttcgatcagttg
tcaccattagagagcaattctccaagccctccaagtgtgagcacagttacagggttccag
cagacccagttacagaaacccaccatcactgccactgccaccacaactgccactgccgcc
accaccaccgatgaatcaaaaacagtgccgaaggacaatatagaagacattaaaatattg
attgcatcgccatcttctacccaagtacctcaagaaatgacgaccactgctaaggcatca
gcatacagtggtgctcacagtcggacagcctccccagacagagcaggagagagagtcgta
gaacagacagacacagctcatccaaggagtcttaacctgtctgtcactttgaatcaaaga
aatactgttcctgaggaagaattaaacccaaagacaatagctttgcagaatgctcagagg
aagcgaaaaatggaacatgatggctccctttttcaagcagcgggaattggaacattattg
cagcaaccaggtgaccgtgcacctgctacgtcactttcttggaaacgagtgaaaggatac
atatctagtgatcaggatgaaatggagcaaaagacaattattttaataccttctgactta
gcatgtagactgctggggcaatcaatggacgagagtgggctaccacagctgaccagttac
gattgtgaagtcaatgctcccatacaaggcagcagaaacctcctgcagggggaggagcta
ctcagagctttggatcaagttaactga
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