Arvicanthis niloticus (African grass rat): 117698028
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Entry
117698028 CDS
T08817
Symbol
Lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117698028 (Lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
anu04990
]
117698028 (Lrfn1)
Cell adhesion molecules [BR:
anu04515
]
Immunoglobulin superfamily
SALM family
117698028 (Lrfn1)
Domain-containing proteins not elsewhere classified [BR:
anu04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
117698028 (Lrfn1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
Ig_3
ig
Ig_2
fn3
LRR_9
LRR_14
Ig_DSCAM-DSCAML_C
CbiM
C2-set_3
Sp38
Motif
Other DBs
NCBI-GeneID:
117698028
NCBI-ProteinID:
XP_034345317
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All DBs
Position
1:6953905..6970015
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AA seq
766 aa
AA seq
DB search
MAPGPFSSGLLSPPPAALPFLLLLWAGASRGQPCPGRCICQNVAPTLTMLCAKTGLLFVP
PAIDRRVVELRLTDNFIAAVRRRDFANMTSLVHLTLSRNTIGQVAAGAFADLRALRALHL
DSNRLAEVRGDQLRGLGNLRHLILGNNQIRKVESAAFDAFLSTVEDLDLSYNNLEALPWE
AVGQMVNLNTLTLDHNLIDHIAEGTFVQLHKLVRLDMTSNRLHKLPPDGLFLRSQGGGPK
PPTPLTVSFGGNPLHCNCELLWLRRLTREDDLETCATPEHLTDRYFWSIPEEEFLCEPPL
ITRQAGGRALVVEGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSRTRVRGDGTLDVTIT
TLRDSGTFTCIASNAAGEATAPVEVCVVPLPLMAPPPAAPPPLTEPGSSDIATPGRPGAN
DSATERRLVAAELTSSSVLIRWPAQRPVPGIRMYQVQYNSSADDSLVYRMIPSTSQTFLV
NDLAAGRAYDLCVLAVYDDGATALPATRVVGCVQFTTAGDPAPCRPLRAHFLGGTMIIAI
GGVIVASVLVFIVLLMIRYKVYGDGDSRRIKGTSRSPPRVSHVCSQTNGAGAQQASAPPA
PDRYEALREVAVPAAIEAKAMEAEATSTELEVVLGRSLGGSATSLCLLPSEETSGEESRA
LTGPRRSRSGALGPPTSAPPTLALVPGGASARPRPQQRYSFDGDYGALFQSHSYPRRARR
TKRHRSTPHLDGAGGGAAGEDGDLGLGSARARLAFTSTEWMLESTV
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggctccaggccccttctcctccgggctcctctcgccaccacctgctgctctccctttc
ctactgctgctctgggcaggagcatctcggggccaaccctgcccgggtcgctgcatctgt
cagaacgtggcccctacactgaccatgctgtgtgccaagaccggcctgctcttcgtgcca
cccgccatcgacaggcgtgtggtcgagctgcggctcactgacaacttcattgcggctgtg
cgtcgtcgagacttcgccaatatgaccagcttggtccacctcaccctgtctcgcaacacc
attggccaggtagcagccggcgcctttgctgacctccgtgctctccgggccctacacctt
gacagcaaccgcctagcagaggttcgaggggaccagctccggggcttgggtaacctccgc
cacttgatcctcggcaacaatcagatccgcaaggtggagtcggcagcctttgacgccttc
ctgtccaccgtggaggacctggatctgtcctacaacaacctggaggcactgccatgggag
gcggtgggtcagatggtgaacttgaacaccctcacactggaccacaatctcattgatcac
attgcggagggcaccttcgtgcagctgcacaaacttgtacggttggacatgacctccaac
cgtctacataaactgcccccagatggactgttcttgaggtcccagggcggtgggcccaag
ccacccactccactgacagtcagcttcggtggcaacccgctgcactgtaactgtgaactg
ctctggcttcggcgcctgaccagggaggatgacttggagacgtgtgccacgcccgagcat
ctcactgaccgctatttctggtccattcctgaggaggaatttctatgtgagcctccactc
atcacacggcaggcagggggccgggccctggtggtagagggccaggctgtcagtctgcgc
tgccgggcagtgggtgaccctgagcccgtggtgcattgggtggcacctgatggacggctg
ctggggaactccagccggactcgggtccgtggtgatggaacgctggatgtgaccatcacc
accctaagggacagcggtaccttcacttgcatagcctccaatgctgcaggggaagccact
gcacccgtggaggtatgtgtggtacctctgccactgatggcgcccccacctgctgccccg
ccgcctctcactgaacctggttcttctgacatcgccacaccaggtagacccggtgccaac
gactcagccactgagcgcaggcttgtggctgctgaactcacgtccagctctgtgctcatc
cgctggccggcgcagaggccagtgcctggcatccgcatgtaccaagtgcaatacaacagc
tctgcggatgactccctagtctacaggatgatcccttctaccagccagactttcctggtg
aacgatctggcggctggccgcgcctatgatttgtgtgtgttggcagtctacgacgacggg
gccaccgctctgccggctaccagagtggtgggctgtgtgcaattcaccaccgcgggagat
cctgcaccatgccgcccactgagggcccacttcttgggcggcaccatgatcatcgccatc
gggggcgtcattgtagcctcggtcctggttttcatcgttctgctcatgattcgctacaag
gtgtacggcgatggggacagccgccgcatcaaggggacgtccagatcgccccctcgggtc
agccatgtgtgctctcagaccaatggcgctggtgcgcagcaggcctccgccccaccagct
ccagaccgctacgaggcgctgcgggaggtcgccgtccctgcagccatcgaggcaaaggcc
atggaggccgaggcgacttccactgagctagaggtggtgcttggacgctctctgggtggc
tccgccacctcgctatgcttgttgccctctgaggaaacttctggggaggaatctagggcc
ttgaccggccctcgaaggagccgttcaggggccttggggcctccaacttcagcgccccca
actctagctctggttcctgggggagcctcggcccggcccaggccacaacaacgctattcc
ttcgacggggactacggggcgctgttccagagtcacagttacccgcgccgcgcccggcgg
acaaagcgccaccggtccacgccacacctggacggggccggagggggcgcggccggggag
gacggagacctggggctgggctccgcccgggcacgcctggccttcaccagcaccgaatgg
atgctggagagtaccgtgtga
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