Arvicanthis niloticus (African grass rat): 117698123
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Entry
117698123 CDS
T08817
Symbol
Ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
anu03009
]
117698123 (Ddx54)
Enzymes [BR:
anu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117698123 (Ddx54)
Ribosome biogenesis [BR:
anu03009
]
Eukaryotic type
Pre-60S particles
Helicases
117698123 (Ddx54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
Motif
Other DBs
NCBI-GeneID:
117698123
NCBI-ProteinID:
XP_034345430
LinkDB
All DBs
Position
Unknown
AA seq
874 aa
AA seq
DB search
MAAGRLVGPGPRSRPAMAQWKKKRLRKRRTGASQARDSDSEDGEFEIQAEDDARERKLGP
GRVLPSFPTSECVSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTP
IQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPTRELALQ
TMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSV
EYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRL
DVDAKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFVATKHHAEYLTELLTGQ
GVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKL
FLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLARPHEEPSGAVGGDGVLG
RVPQSIVDDEDSSLQTAMEASLDLQGLHRVANNSQQQYVRSRPAPSPESIKRAKELNLAE
LGLHPLFSSCFEEGELQRLRLVDSIKNYRARTTIFEINASSKDPSSQMMRAKRQRDRKAI
ASFQHGRQEKQEGPAGPVPQRELPQKEEEEEDMAETAEGVFTEVVGHKRPRPEPSQGAKR
RRKEAGQRDQEFYVPYRPKDFDSERGLSVSGAGGAFEQQVAGAVLDLMGDEAQNMSRGRQ
QLKWDRKKKRFVGQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQKQKIDDQDSEEEGPS
NQRGPGPRRGGKRGRSQGASHPRASSVPSGRMRSELKTKEQILKQRRQAQKQRFLQRGGL
KQLSARNRRRAQELRQSAFGRGAPSRKGKMRKRM
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgggagactcgtgggtcctgggccgcggtcgcgtcccgccatggcgcagtgg
aagaagaagaggctacggaaacgccgaacgggggcttcccaggcccgcgacagcgattcg
gaggacggcgagttcgagatccaggcggaggatgacgcccgggagcgaaagctgggccct
ggcagagtcttgccctcatttcctacctcagagtgcgtatcagatgtggagcccgacacc
cgggagatggtgcgagcccagaacaagaagaagaagaagtctggaggcttccagtccatg
ggcttgagctaccctgtattcaaggggatcatgaaaaagggctacaaggtgccaacgccc
atccagaggaagaccatccctgtgatcttggatggcaaggatgtggtggccatggcccgg
acgggcagcggcaagacggcctgcttcctcctgccgatgtttgagcggctgaaggcacgc
agcgcacagacgggggctcgggccctcatcctctcacccacccgggagctggccctgcag
accatgaagttcacgaaagagctgggcaagttcaccggcctcaagactgccttgattctg
ggtggagacaaaatggaggaccagtttgcagccctgcacgagaaccctgacataatcatc
gccacccctgggcggctggtgcatgtggccgtggagatgaacttgaagcttcagagtgtg
gagtatgtggttttcgatgaagcagacaggctctttgaaatgggatttgccgagcagctc
caggagatcataggccgcctgcctggaggccaccagacggtgctgttctcagccacgctg
cccaaactgctggtggaatttgcacgggcaggcctcacagagcccgtgctcatccgcctg
gacgtagacgccaagctcaacgagcagctcaagacctccttcctcctcgtgcgtgaggac
accaaggctgccgtgcttctctacctgctgcagaacgtcgttcggccccaggaccagact
gtggtgttcgtagccacaaagcaccacgcggagtacctcacagagctgctgacgggccag
ggtgtgagctgcgcccacatctacagtgccttggaccagacggcacgcaagatcaacttg
gcaaagttcacacacaacaaatgctccacgctcatcgtgactgacctggccgcccggggc
ctggacatcccactgctggacaatgttatcaactacagcttccctgccaagggcaagctc
ttcttgcaccgagtgggccgtgtggcccgagcaggccgaagtggcacagcctattccttg
gtggctccagatgaggtcccctacctgcttgacctacacctcttcctgggccgctctgtc
accttagcccggcctcatgaggagccttcaggcgcagttggcggagacggagtgctgggt
cgggtgccacagagtatagtggacgacgaggacagcagcctgcagaccgccatggaggcg
tcactggaccttcagggcctgcaccgtgtggccaacaactctcagcagcagtatgtgcgc
tcacgtccagcaccctcgcctgagtccatcaagcgagccaaggaactgaacctggcagaa
ctgggcttgcacccactcttcagctcgtgctttgaggagggagagctgcagcgcctgagg
ctggtggacagcatcaagaactatcgtgcacgcacaaccatctttgagatcaatgcctcc
agcaaggacccaagcagtcagatgatgcgtgccaagcggcagagagaccgaaaagctatt
gccagcttccagcacgggcgtcaggaaaagcaggaaggcccagctggcccagtcccccag
agggagctgcctcagaaggaagaggaagaggaggacatggctgagactgcagagggtgtc
ttcacagaggttgtgggccacaaacggccaaggccagagcccagccaaggagccaagcgg
cggaggaaggaggccggtcagcgagaccaggagttttatgtcccctaccggcccaaggat
tttgacagtgagcgggggctaagtgtcagtggggctggaggggccttcgagcagcaggtg
gctggtgctgttcttgacctgatgggggatgaagcgcagaacatgagccggggtcggcag
cagctcaagtgggaccggaagaagaagcggtttgtggggcagtcaggccaagaggacaag
aaaaagatcaagacagagagtggccggtatatcagcagctcttacaagcgcgacctctac
cagaagtggaagcagaagcagaaaattgatgaccaggactccgaggaagaggggccatcc
aaccagcgaggccctgggccccgccgaggtggaaagcgaggtcgtagtcaaggtgcatcc
catccccgagcgtccagtgtaccctcaggccgcatgcgctcagaactcaagaccaaggaa
cagatcctcaagcagcgccggcaagcccagaagcagcgcttcctgcagcgagggggcctg
aagcagctttcagcacgcaaccgccgccgcgcccaggagctgcgccagagtgcctttggc
cgaggtgctccctccaggaagggcaagatgaggaaaaggatgtaa
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