Arvicanthis niloticus (African grass rat): 117698173
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Entry
117698173 CDS
T08817
Symbol
Trim56
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
anu04121
]
117698173 (Trim56)
Enzymes [BR:
anu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117698173 (Trim56)
Ubiquitin system [BR:
anu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117698173 (Trim56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
ANCHR-like_BBOX
zf-C3HC4_4
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
117698173
NCBI-ProteinID:
XP_034345507
LinkDB
All DBs
Position
Unknown
AA seq
736 aa
AA seq
DB search
MNSKVSSPTLLEALSSDFLACKICLEQLHTPKTLPCLHTYCQDCLALLDICGQVRCPECR
EIVPVPPEGVAAFKTNFFVNGLLDLVKARAPGDIHSGKPTCALCPLVGGKSSGGPATARC
LDCADDLCQACADGHRCSRQTHKHRVVDLVGYRAGWYDEEARERQASQCPQHPGETLCFL
CQPCSQLLCKDCRLGPHIDHPCLPLAEAVRSRKPGLEELLAGVDSNLAALEATRVAEKEA
LALLREQAASVGTQVEEAAERILKSLLAQKQEVLGQLRALVEAAEEATRERLTKIEGQEQ
VAKAAAAFARRVLSLGLEAEILSLEGAITQRLRQLQDSPWTSGPTRCVLPHLELYPGLED
KNCHLLRLSFEEPEQSQKDNEKGGASIQGGDEAQAQGQGEDRTKIGKQGGAQPLTPKEGK
AQNPQEDDEVLVERGNRPNKKKKCKGRGKSVSREPSPILRPNLEGSGLLPRPVFSWSFPT
RMPGDKRSPRITGLCPYGPQEILVADEQNRVLKRFSLNGDYKGTVPVPEGCSPCSVAALQ
NAVAFSANARLYLVSPEGEVQWRRSLSLTQSSHAVAAMPCGDRVAVSVAGHVEVYKKEGN
LATRFIPGGKASRGQRALVFLTTSPQGNFVGSDWQQNSVVFCDGLGQVIWEYKGPGLHGC
QPGSVSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAYHGLEKPRVTTMVDGKYLVVS
LSNGTIHVFRVRFPDS
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaactccaaagtctcctccccaaccctgctggaagctctgagcagcgatttcctagcc
tgtaaaatctgcctggagcagttacacacacccaagactctcccatgcctgcatacctat
tgccaggactgtctggccctactggacatctgtggccaggtccgctgccccgagtgtcgg
gagattgtacctgtaccccccgaaggtgtggccgcctttaagaccaacttctttgtcaat
gggctcttggatcttgtcaaggccagagctcccggagacatccattcagggaagccaacc
tgcgctctatgccctctggtgggaggcaagagctccgggggacccgccacagccaggtgc
ctagactgtgctgatgacttatgccaggcctgtgccgatgggcaccgctgctcccgccag
acccataaacaccgtgtcgttgacttggtgggttatagagccggctggtatgatgaagag
gctcgcgagcgccaagcatcccagtgtccccaacatccaggggaaaccctctgcttcctc
tgtcagccttgctctcagttgctctgcaaggattgccgcctgggtccccatattgatcac
ccctgcttgcccctggcagaagccgtgcgttccaggaagccaggccttgaggaattattg
gcaggtgtggacagcaatctggcggcgctagaggccactcgggtggcagaaaaggaagcc
ctggccttgcttcgggagcaggcagccagtgtggggacgcaggtggaggaggcagctgaa
cgaatcctcaagtccctgctggcccagaagcaggaagtgttgggacaactccgggccctc
gtggaggctgccgaggaggctaccagggagaggctgaccaagatagaaggccaggagcag
gtggccaaggcggctgctgcctttgcccgtcgagtgctcagcctgggtctggaggccgag
atcctttcgctggagggagcgatcacacagcgcctgcgccagcttcaagactctccctgg
acgtctggacccacccgctgtgtgctgccccatctggagctgtatcctggcctcgaggac
aagaactgccacctgctccgactctcctttgaggagccagaacagtcccagaaggacaat
gagaagggtggagccagtatccaaggaggagacgaagctcaagctcaaggccaaggggaa
gatagaaccaagatcgggaagcagggtggagcccagcccctgactcccaaagaaggcaaa
gcccagaacccccaagaagatgacgaggtcctcgtcgaaaggggtaacaggcctaacaag
aagaaaaagtgtaaaggccggggcaagtccgtgtctcgggagcccagccccatcctgagg
ccaaacttagaaggttcaggcctcctccctcggcctgttttttcctggagtttccccacg
aggatgcctggggacaagcgctccccgcggatcactgggctctgtccctacggcccccag
gagatcttggtagcagatgagcagaacagggtgttgaaacgcttctccctcaatggggac
tacaagggcacagtgccggtccccgagggctgttccccgtgcagcgtggctgccttgcag
aacgcagtggctttctccgccaacgcaaggctctatcttgtcagtcctgagggggaggtt
caatggcgcaggtccctgagcctcacgcagtccagccacgctgtggccgcaatgccatgt
ggagaccgggtggccgtcagtgtggcaggccacgtggaggtatacaagaaagaaggcaac
ctggctacccggtttatccccggaggcaaggctagccggggccagcgggcactggtgttc
ctgaccaccagcccccagggcaattttgtagggtcagattggcagcagaatagcgtggtt
ttctgtgatggcctgggtcaggtgatctgggaatacaagggcccagggttacatggctgc
cagccaggttctgtgtctgtggataagaagggctacatatttctgacccttcgagaggtg
aacaaggtggtgatcctagatcccaagggttcacttcttggtgacttcctgacagcatac
cacggcctggaaaagccccgggtaaccaccatggtagacggcaaatacttggtggtgtca
cttagtaatgggaccatccatgtctttagggtcaggtttcctgacagttaa
DBGET
integrated database retrieval system
