Arvicanthis niloticus (African grass rat): 117698325
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Entry
117698325 CDS
T08817
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117698325 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117698325 (Xab2)
03041 Spliceosome [BR:
anu03041
]
117698325 (Xab2)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117698325 (Xab2)
Spliceosome [BR:
anu03041
]
Complex B
Other components
Prp19-related factors
117698325 (Xab2)
Complex C
117698325 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
Suf
TPR_8
TPR_15
ARM_TT21
TPR_NPHP3
ARM_TT21_C
TPR_1
Motif
Other DBs
NCBI-GeneID:
117698325
NCBI-ProteinID:
XP_034345760
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MAAMARVPRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHRDSPEEIVNTYTAALQTVDPFKATGKPHTLWVAFAKFYEDNDQLNDARTILEK
ATEVNFKQVDDLASVWCQCGELELRHGEYKAALRLLRRATALPARQAEYFDGSEPVQNRV
YKSLKVWSMLADLEEGLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHQYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYEMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKEFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgatggcgcgagttccgcgtcccgagcggccggatcttgtttttgaagaagag
gaccttccctatgaggaagaaatcatgaggaaccagttctccgttaaatgctggctccgc
tacatcgagttcaaacagggggcccccaaaccccgactcaaccagttgtatgagcgggca
ctgaaactgcttccctgcagctacaaactctggtaccgctatctgaaggcacgccgggcg
caggtgaaacatcgctgtgtgactgacccagcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccacgcctgtggctagactactgccagtttctc
atggatcagggaagagtaacacatacccgccgtacctttgaccgtgccctcagggcactg
cccatcacacagcactctcgcatctggcccctgtatctgcgtttcctgcgctcccaccca
ctgcctgagactgctgtgcgaggctaccgtcgattcctcaagctgagtcctgagagtgct
gaggagtacatcgagtatctcaaatccagtgaccggctggacgaggctgcacagcgcctg
gccactgtggtgaacgatgagcgcttcgtatccaaggccggtaaatccaactaccagctg
tggcacgagctgtgtgaccttatctcccagaatcctgacaaggtacagtctctcaacgtg
gatgccataatccgtggtgggctcacccgattcactgaccagctgggcaagctgtggtgc
tccctggcagactactatatccgcagtggccacttcgaaaaggctcgggatgtgtatgag
gaggccatccgcacggtgatgactgtgcgagacttcacccaggtgttcgacagctacgcc
caatttgaggagagcatgattgcagcgaagatggagactgcctctgaactggggcgtgag
gaggaggatgatgtggacctggagctgcgcctggcccgcttcgagcagctcattagccga
cggcccctgcttctcaatagcgttctccttcgccagaacccacaccacgtccatgagtgg
cacaagcgtgtagctctgcatcgggactcccctgaggagattgtgaacacgtacacagcg
gctttgcagacagtagaccccttcaaagccacaggcaagccccacacactatgggttgca
ttcgccaagttttacgaagacaatgatcagctgaatgatgctcgtaccatcctagagaag
gccaccgaggtgaacttcaagcaggtggacgacttggcgagtgtgtggtgccagtgtggg
gagctggagctccgccatggggaatacaaggcggccttacgtctgcttcggcgagcgaca
gctttgcctgcccgccaggctgagtactttgatggttcagagcctgtgcagaaccgtgta
tacaagtcgctgaaggtgtggtccatgcttgctgacttggaggaaggcctgggcactttc
cagtcaaccaaggccgtgtatgaccgaatcctcgacctgcgcatagccacgccacagatt
gtcattaactacgccatgttcctagaggagcaccagtactttgaggagagcttcaaggca
tatgagcgcggcatctcgctgttcaagtggcccaatgtttcagacatctggagcacctac
ctgaccaaattcatctcacgctatgggggccgcaagctggagcgtgcacgggatctcttt
gagcaggcactagatggctgcccaccaaaatatgccaagactttatatctgctttacgca
cagctggaagaggagtggggccttgcccgccatgccatggctgtgtatgatcgtgctacc
agggcagtagagccagcccagcagtatgaaatgtttaacatctacatcaagcgggccgct
gagatctatggtgtcacccacactcgtggcatctaccagaaggccattgaggtgctgtcg
gatgagcatgcccgtgagatgtgcctgcggtttgcagacatggagtgcaagcttggtgag
attgaccgcgcccgggctatctacagcttctgctcccagatttgtgatccccggacaact
ggggcattctggcaaacatggaaggagtttgaagtccggcatggcaatgaggataccatc
agggagatgctgaggatacggcgaagtgtgcaggccacatacaatactcaggtcaacttc
atggcttcacagatgctcaaggtgtcgggcagtgccacaggcacggtgtctgacctggct
cctgggcagagtggcatggatgacatgaagttgctggaacagagagcagaacagctcgca
gctgaggcagaaagggaccagccccccagggctcagagcaagatcttctttgtaaggagt
gatgcatccagggaggaattggcagagctggctcagcaggccaaccctgaggaaatccaa
ctgggcgaggatgaggacgaggatgagatggacctggaacccaatgaagtccggctggag
cagcagagtgtgccagctgctgtgttcgggagcctaaaggaagactga
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integrated database retrieval system
