Arvicanthis niloticus (African grass rat): 117698698
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Entry
117698698 CDS
T08817
Symbol
Trpa1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1 isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04750
Inflammatory mediator regulation of TRP channels
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09157 Sensory system
04750 Inflammatory mediator regulation of TRP channels
117698698 (Trpa1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
anu04040
]
117698698 (Trpa1)
Ion channels [BR:
anu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117698698 (Trpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
117698698
NCBI-ProteinID:
XP_034346193
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
MKRSLRRILCPEERKEVQGVVYRGVGKDMDCSKESFKVDIEGDMCRLENFIKNRRKVSKY
EDENLCPLHHAAAEGQVELMELIISGSSCEVLNIMDDYGNTPLHCAAEKNQVESVKFLLS
QGANPNLRNRSMMSPLHIAVQGMYNEVIKVLTEHKATNINLEGENGNTALMSTCAKDNSE
ALQILLEKGAKLCKSNKWGDYPVHQAAFSGAKKCMELILAYGEKDGYSRESHINFVNHKK
ASPLHLAVQSGDLEMIKMCLDNGAHIDMMENAKCMALHFAATQGATDIVKLMISSYTGSC
DIVNAVDGNQETLLHRASLFDHHDLADYLISVGADINSTDSEGRSPLILATASASWNIVN
LLLSKGAKVDIKDHFGRNFLHLIVQQPYGLRNLRPEFMQMQHIKELVMDEDNDGCTPLHY
ACRQGVPVSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGD
LHGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHNGWTALHHASMGGYTQTMKVILDTNLK
CTDRLDEEGNTALHFAAREGHAKAVAMLLSYNADILLNKKQASFLHIALHNKRKEVVLTT
IRSKRWDECLQVFTHDSPSNRCPITEMVEYLPECMKVLLDFCMIPSTEDKSCQDYHIEYN
FKYLQCPLSMTKKVAPTQDVIYEPLTILNVMVQHNRIELLNHPVCREYLLMKWCAYGFRA
HMMNLGSYCLGLIPMTLLVVKIQPGMAFNSTGIINETSSTHEEGIDTLNSFPIKICMILV
FLSSIFGYCKEVVQIFQQKRNYFLDYNNALEWVIYTTSIIFVLPLFLNIPAYMQWQCGAI
AIFFYWMNFLLYLQRFENCGIFIVMLEVIFKTLLRSTGVFIFLLLAFGLSFYVLLNFQDA
FSTPLLSLIQTFSMMLGDISYRDAFLQPLFRNELAYPVLTFGQLIAFTMFVPIVLMNLLI
GLAVGDIAEVQKHASLKRIAMQVELHTNLEKKLPLWYLRKVDQRSTIVYPNRPRHGRMLR
FFHYFLSMQETRQEVPNIDTCLEMEILKQKYRLKDLTSLLEKQHELIKLIIQKMEIISET
EDEDNHCSFQDRFKKERLEQMHSKWNFVLNAVKTKTHSSISHPDI
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcagcttgaggaggattctgtgcccagaagaaaggaaggaggtccagggcgtt
gtctatcgtggcgtgggaaaagacatggactgctccaaggaatcctttaaggtggacatt
gaaggagatatgtgcagattagaaaacttcatcaagaatcgaagaaaagtcagcaaatat
gaggatgaaaatctctgccctttgcatcacgcagcagcagaaggtcaagttgaactaatg
gaattgatcatcagtggttcttcctgtgaagtgctgaatataatggatgattatggaaat
accccactgcactgcgctgctgaaaaaaatcaagttgaaagtgtgaagtttcttctcagc
caaggagcaaatccaaacctccgaaacagaagcatgatgtcaccccttcacatagctgtg
caggggatgtacaacgaagtgatcaaggtcttgactgagcacaaggccactaacatcaat
ttagaaggagagaatgggaacacagctttgatgtccacgtgtgccaaagacaacagtgaa
gctttgcaaattttgttagaaaaaggagctaagctgtgtaaatcaaataaatggggagac
taccctgtgcaccaggcagcattttcaggtgccaaaaaatgcatggaattaatcttagca
tatggtgaaaaagatggctacagcagggagtctcacattaactttgtgaatcacaagaag
gccagccctctccacctcgcagttcagagcggtgacttggagatgattaagatgtgcctg
gacaatggtgcacacatcgacatgatggagaatgccaaatgcatggccctccattttgct
gcaacccagggagccactgacatcgtgaagctcatgatctcatcctatactggaagctgt
gatattgtgaatgcagtcgatggcaatcaggagaccctgcttcacagagcctcattattt
gatcaccatgatctggcagactacctaatttctgtgggagccgacatcaacagtactgat
tccgaaggacgctctccacttattttagcaactgcttctgcatcctggaatattgtgaat
ttgctcctctctaaaggtgccaaagtagacataaaggatcattttgggcgtaacttttta
cacttgattgtgcagcagccttacgggctaagaaacttgcggcccgagtttatgcagatg
cagcacatcaaggaactggtgatggatgaagataatgatggatgtacacctctccattat
gcgtgtaggcagggggtccctgtctctgtaaataacctccttgggttcaatgtgtccatt
cattccaaaagcaaagataagaagtcacccctgcattttgcagccagttatgggcgcatc
aatacatgtcagaggcttctgcaagacataagtgacacaaggcttttgaatgaaggagat
ctccatggaatgacccctctccacctggcagccaagaatggacatgataaagtcgttcaa
cttcttctaaagaaaggggccttatttctcagtgaccacaatggctggactgctttgcat
catgcgtccatgggtgggtacactcagaccatgaaggtcattcttgacactaacttgaag
tgcacagaccggctagatgaagaagggaacacagcgctgcacttcgcagcacgggaaggc
catgccaaggctgtcgcaatgctcttgagctacaatgctgacatcctcctgaacaagaag
caagcttcctttctgcatattgcactacacaataagcgcaaggaagtggttctcacaacc
atcaggagtaaaagatgggatgagtgtcttcaagttttcactcatgattctccaagcaat
cgatgtccaatcacggagatggtagaatacctccctgagtgcatgaaagttcttttggat
ttctgcatgataccttccacagaagacaagtcctgtcaagactatcatattgaatataat
ttcaagtatctccagtgcccattatctatgactaaaaaagtagcacctacccaggatgtg
atatatgagcctcttacaatcctcaatgtcatggtccaacataaccgcatagagctcctc
aaccaccctgtgtgtagggaatacttactcatgaagtggtgtgcctatggattcagagcc
cacatgatgaacctgggatcttattgtcttggtctcatacctatgacccttcttgttgtc
aaaatacagcctggaatggccttcaattctactggaataatcaatgaaactagtagtact
cacgaggaaggaatagacactctgaattcatttccaataaaaatatgtatgattctagtt
tttttatcaagtatatttggatattgcaaagaagtagtccaaattttccaacagaaaagg
aattacttcctggattataacaatgctctggaatgggttatctacacaaccagtatcatc
tttgtgctgcccttgttcctcaacatcccagcatacatgcagtggcagtgtggagcaata
gccatattcttttactggatgaacttcctactgtatcttcaaaggtttgagaactgtggg
attttcattgttatgctggaggtgatttttaaaacactgctgagatccacgggagtgttt
atctttctcctattggcgtttggcctcagcttttacgtcctcctgaatttccaagatgcc
ttcagcaccccattgctttccttaatccagacgttcagtatgatgctaggggacatcagt
tatcgagacgccttcctacaaccattgtttagaaatgagttggcatacccagtcctgacc
tttgggcagcttattgccttcacaatgtttgtcccaattgttctcatgaacttactgatt
ggtttggcggttggggacattgctgaggtccagaagcatgcgtcgctgaagaggattgct
atgcaggtggaacttcataccaacttagaaaaaaagctgccattatggtacttacgaaaa
gtggatcagaggtccaccatcgtgtatccgaatagacccaggcacggcaggatgctacgg
tttttccattactttcttagtatgcaagaaacacgacaagaagtaccaaacattgacaca
tgtttggagatggaaatattgaaacagaaataccggctgaaggacctcacttctctcttg
gaaaagcaacatgaactcatcaaacttatcatccagaagatggaaatcatctcggagaca
gaagatgaagataaccattgctctttccaagacaggttcaaaaaggaacggctagaacaa
atgcatagcaaatggaattttgtcttgaacgcagttaagacaaaaacacattcttctatt
agccatccagacatttag
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integrated database retrieval system
