Arvicanthis niloticus (African grass rat): 117699010
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Entry
117699010 CDS
T08817
Symbol
Ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117699010 (Ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117699010 (Ddx6)
03036 Chromosome and associated proteins [BR:
anu03036
]
117699010 (Ddx6)
Enzymes [BR:
anu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117699010 (Ddx6)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117699010 (Ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
117699010 (Ddx6)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117699010 (Ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
117699010
NCBI-ProteinID:
XP_034346569
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGTQPQPQMNQLKNSSTLNNGTPQQAQ
SVAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNCHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAED
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttatcatgggtctgtccagtcagaatggccag
ctgaggggccccgtgaaggccagtgctggccctggaggagggggcacacagccacagcca
cagatgaaccagctgaagaacagcagcacactgaataacggcactccgcagcaggcacag
agcgtggctgccacgattaaacctggtgatgactggaaaaagactttaaaactccctcca
aaggatctaagaatcaaaacctcggatgtgacctccacaaaaggaaatgagtttgaagat
tactgtttgaaacgagagttgctaatgggaatttttgaaatgggctgggaaaaaccgtct
cctattcaggaggagagcattcccattgctttatctggtagggatatcttagctagagca
aaaaatggaacaggcaaaagcggtgcctacctcatccccttacttgaacggctggacctg
aagaaggacaatattcaagcaatggtgattgttcccactagagaacttgctctacaggtc
agtcaaatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcaaccact
ggaggaaccaatttgcgggatgacataatgaggcttgacgacacagtgcatgtggtgatt
gctacccctggcagaatcctggatcttatcaagaaaggagtagcaaaggttgatcatgtc
cagatgatagtattggatgaggcagataagttgttgtcacaggattttgtgcagataatg
gaggatattattctcacactacctaaaaataggcagattttactatattccgctactttc
cctcttagtgtacaaaagtttatgaattgccatctgcaaaaaccctacgagatcaacctg
atggaggagctgacgctgaagggggtgacccagtactatgcctatgtgacagagcgccag
aaagtgcactgcctcaatacactcttctccaggcttcagatcaaccagtcgatcattttc
tgcaactcttctcagagagttgaattactggccaagaagatttcccagctgggttactct
tgcttctatatccatgctaaaatgaggcaggaacatcgaaatcgtgtctttcatgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatata
caagctgtgaatgtggtgataaattttgacttcccaaagctggcagagacctatcttcat
cgtattggaagatcaggtcgctttggtcaccttggcttagccatcaacttgatcacgtat
gatgatcgcttcaacctgaagagtattgaggagcagctggggacagagatcaaacccatc
ccgagcaacattgacaagagcctgtatgtggcagagtaccacagcgagcctgcagaagac
gagaaaccttaa
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