Arvicanthis niloticus (African grass rat): 117699031
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Entry
117699031 CDS
T08817
Symbol
Thsd4
Name
(RefSeq) thrombospondin type-1 domain-containing protein 4 isoform X1
KO
K23377
thrombospondin type-1 domain-containing protein 4
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
117699031 (Thsd4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
anu04990
]
117699031 (Thsd4)
Domain-containing proteins not elsewhere classified [BR:
anu04990
]
Thrombospondin domain-containing proteins
ADAMTS-like proteins
117699031 (Thsd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP1_ADAMTS
ADAMTS_spacer1
TSP_1
ADAMTS_CR_3
TSP1_CCN
PLAC
TSP1_spondin
Motif
Other DBs
NCBI-GeneID:
117699031
NCBI-ProteinID:
XP_034346619
LinkDB
All DBs
Position
Unknown
AA seq
1018 aa
AA seq
DB search
MVSHLTSCLSALSALLLLLGSQLVCPQPSTEHRKVPQRMAVAEGTPEDSGGGSPGVWGSW
GPWSACSRSCSGGVMEQTRPCLPSSYRARGSSRPNGPTLSITGHVVSAVRTSVPLHRSQE
DQRALTGSSASRQGPTVVRGSRHPQARGREPSERRSRTRGPIGPGKYGYGKAPYILPLQT
DATHTPQRLRRQRPSSRHSRSQEASASKQGYRPPTHQFSHNRPLYQSDSGPRSGLPPSDA
SIYQLPLTQDQSYPAASSLFHSSELSGNNGARPQGAAQAFSQHLRSTAISCIGAYRQYKL
CNTNACPESGRSIREVQCASYNNKPFMGRFYEWEPFAEVKGNRKCELNCQATGYRFYVRQ
AERVIDGTPCDQNGTAICVSGQCKSIGCDDFLGSDKVVDKCGVCGGDNTGCQVVSGVFKH
ALTSLGYHRVVEIPQGATKINITEMHKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGT
MFTYKRPNEISSTAGESFLAEGPTNEILDVYMIHQQPNPGVHYEYVIMGNNAISPQVPLH
RRPGEPFNGQLETEGGGQGDREEREKNQEKEDSRVEAPEVFTSESSQTFPVRQPERFPSH
RPDNLVPPAPQPPRRSRDHNWKQLGTTECSTTCGKGSQYPIFRCVHRNTHEEVPESYCDS
SMKPTPEEEPCNLFPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANRSLTVQPYRCQ
HLEKPETTSTCQLKICSEWQIRTDWTSCSVPCGVGQRTRDVKCVSNIGDVVGDEECNMKL
RPNDFENCDMGPCAKSWFLTEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGCGNNRPA
EATPCDNGPCTGKVEWFTGSWSQCSIECGSGTQQREVICVRKNADTFEVLDPYECSFLEK
PPSQQACHLKPCGAKWFSTEWSMCSKSCQGGFRVREVRCLSDDMTPGSLCDPQLKPEERE
SCNPQDCVPEVDENCKDKYYNCNVVVQARLCVYNYYKTACCASCTRVANRHTGFLGSR
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggtttcccatctcacaagctgtctcagtgccctgagtgccctcctgctgctgcttggt
tctcagcttgtctgcccgcagccctccactgaacacagaaaggtcccacaacggatggca
gtggccgagggaaccccagaggacagtggtggtggctccccaggtgtgtggggctcctgg
ggcccctggtctgcctgttcacgcagctgcagtggtggtgtgatggaacagacacggccc
tgcctgcccagttcctaccgtgcccgaggaagctcccggcccaatggccctacactatcc
atcactggccacgttgtgtcagctgtacggacctcagtacctctgcatcgaagccaggag
gaccaacgtgccctgactggctccagtgccagccgccaaggccccacagtggtgcgaggc
agccggcacccacaggcccggggccgtgaaccctcagagagaaggagcaggaccagaggt
cccattggccctggcaagtatggctatgggaaggctccctacatcttaccactgcagacg
gatgccacacatactccacagaggcttcggagacaaaggccttcatccaggcactccagg
tcccaggaggcatctgcttctaagcagggctacaggccaccaacccaccagttctcccac
aacagacctctctatcagagcgacagtggccctcgttctggactgccaccttctgacgcc
tctatctatcagctgcctttgacccaagaccaaagctatcctgcagcttcaagtctcttc
cacagctcggaattgagcggtaacaatggtgctaggccccaaggggcagctcaggccttc
tcccagcatcttcgatccacagcaatctcctgcatcggggcctatcggcaatacaaactg
tgcaacactaacgcgtgtccagaaagtggcagaagtatccgggaggtacagtgtgcatcc
tacaacaacaagccattcatgggcaggttttatgaatgggaaccatttgcggaagtaaag
ggtaatcgcaagtgtgagctgaactgccaggcgaccggctaccgcttctacgttcggcaa
gccgagagggtcattgatggtacaccctgtgatcagaatggcacagcgatctgtgtgtcg
gggcagtgcaagagcattggatgtgacgacttcctgggatctgacaaagtcgtggacaag
tgcggggtgtgtggaggtgataacacgggctgccaggtggtgtcgggtgtgtttaagcat
gccctcaccagcctgggctaccaccgagttgtagagattccccaaggagccacaaaaatt
aacattacagagatgcacaagagcaacaactatttagccttgcgaagtcgctcaggccgc
tccatcatcaatggtaactgggccatcgatcgcccggggaaatacgagggcggagggacc
atgttcacctacaagcgaccgaacgagatctccagcactgctggggagtccttcttggct
gaaggtcccactaatgaaatcctggatgtctatatgatacaccagcagcccaacccaggg
gtccactatgagtacgtgatcatggggaataatgccatcagcccacaggtgccactgcac
aggagaccaggagaacctttcaatggacagttggaaacggaaggtggaggtcagggggac
agggaagagagggagaagaaccaggagaaggaagactcacgtgtcgaagcccctgaggta
ttcacatcagaatcctcgcagaccttcccagtcaggcagccggagagattcccttcccac
cggccagacaacttggtgcccccagcaccacagccccccaggcgaagccgggaccacaac
tggaagcagctggggacaacagaatgttccaccacctgtgggaaaggatcgcagtaccct
atcttccgctgtgtgcacagaaacacacatgaggaggttccagagagctactgtgactcc
agcatgaagccgaccccagaggaggagccctgcaaccttttcccctgcccagccttctgg
gacatcggggagtggtccgagtgcagcaagacctgtggcctgggcatgcagcaccgccag
gtcctgtgccgccaggtgtatgccaaccgtagcctgacggtgcaaccctaccgctgccag
cacctggagaagccggagaccaccagcacttgccagctcaagatctgcagcgagtggcag
attcgaactgactggacctcgtgctccgtgccctgtggcgtggggcagcggacccgggat
gtgaagtgcgtgagcaacatcggggacgtggtgggtgacgaggagtgcaacatgaagctc
cggccaaacgacttcgagaactgtgacatggggccctgtgcgaagagctggttcctcaca
gaatggagtgaaaggtgctcagcggagtgtggggctggagtgaggacacggtccgtggtg
tgcatgaccaaccacgtgagcagcctgccgttggaaggctgcgggaacaacaggccagcg
gaggctacaccctgtgacaatgggccctgcacaggcaaggtggagtggttcactggcagc
tggagtcagtgttccatcgagtgtggcagtgggacacagcagagggaggtgatctgtgtt
aggaagaatgcagacacctttgaagtgctagacccttatgagtgttcattcctggagaag
cccccgagccagcaggcctgccacctcaagccttgtggagctaagtggtttagcacagaa
tggagcatgtgctccaagagctgtcagggcggattccgggttcgggaagttcggtgtctg
tcagatgacatgacccccggtagcctctgcgacccccagttgaaaccagaagagagagaa
tcttgtaaccctcaggactgtgtccctgaagttgatgaaaactgcaaggacaagtactac
aactgcaacgtggtggtccaggcgcgcctctgtgtctacaactactacaagaccgcctgc
tgtgcctcttgcacccgagtggccaacagacacacaggctttctggggagccgataa
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