Arvicanthis niloticus (African grass rat): 117700117
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Entry
117700117 CDS
T08817
Symbol
Chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anu03021
]
117700117 (Chd1)
03036 Chromosome and associated proteins [BR:
anu03036
]
117700117 (Chd1)
Transcription machinery [BR:
anu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117700117 (Chd1)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
117700117 (Chd1)
SLIK complex
117700117 (Chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
Helicase_C
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
117700117
NCBI-ProteinID:
XP_034347855
LinkDB
All DBs
Position
Unknown
AA seq
1712 aa
AA seq
DB search
MNGHSDEESVRNGSGESSQSEDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDSGS
QSESESDTSRENKVQAKPPKVDGAEFWKSNPSILAVQRSAMLRKQPQQTQQQRPASSNSG
SEEDSSSSEDSDDSSSDVKRRKHNDEDWQMSGSGSPSQSGSDSESEEEREKSSCDGTESD
YEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEDEDDEDYDNDKRSSRRQATVNVSY
KEDEEMKTDSDDLLEVCGEDVPQTEDEEFETIERFMDCRVGRKGATGATTTIYAIEADGD
PNAGFEKNKEPGDIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRW
LKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGLPDYYCKWQGLPYSECS
WEDGALISKKFQTCIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELR
DYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTL
TSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAF
LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP
EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ
KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH
LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL
RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNK
EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVA
NFSNMDEDDIELEPERNSKNWEEIIPEEQRRRLEEEERQKELEEIYMLPRMRNCAKQISF
NGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFG
GPLERLDAIARDAELVDKSETDLRRLGELVHNGCVKALKDSSSGTERAGGRLGKVKGPTF
RISGVQVNAKLVIAHEDELMPLHRSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLL
IGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKEA
QRLSGAGGSKRRKTRAKKNKAMKSIKVKEEVKSDSSPLPSEKSDEEDEKVNDSKPESKDR
SKKSVVSDAPVHITASGEPVPIAEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSE
REQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHA
IKKRQESQQNSDQNSNVTTTTHVIRNPDVERLKENTNHDDSSRDSYSSDRHLSQYHDHHK
DRHQGDSYKKSDSRKRPYSSFSNGKDHREWDHYRQDSRYYSDREKHRKLDDHRSREHRSS
LEGSLKDRCHSDHRSHSDHRVHSDHRSSSEHTHHKSSRDYRYLSDWQLDHRVASSGPRSP
LDQRSPYGSRSPFEHSTEHRSTPEHTWSSRKT
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacacagtgatgaagaaagtgttagaaatggcagcggagaatcaagtcagtca
gaagatgattctgggtcagcatcaggctctggatctggctcaagttctggcagcagcagt
gacggaagcagtagccagtctgggagcagcgactctgattctggttctgactcaggaagt
caatcagagtctgaatcagacacatcccgagagaacaaagttcaagcaaaaccaccaaaa
gttgatggagctgagttttggaaatccaaccccagtattctggctgttcagaggtctgcc
atgcttaggaagcagccacagcagacccagcagcagcgcccagcttcatctaatagtgga
tccgaagaggattcctctagcagtgaagactcagacgactcatccagcgacgtcaagagg
agaaagcataatgatgaagactggcagatgtctgggtccggatctccatctcagtctggt
tcagattcagaatctgaagaagagagagagaaaagtagctgcgatggcacagaatctgat
tatgagccaaaaaacaaagtcaaaagcaggaaacctcagaatagatctaagtcaaaaaat
ggaaaaaaaattcttggacaaaaaaagagacagattgattcgtctgaagatgaagatgac
gaagactatgataatgataaacgaagctctcgtcgacaagccactgtcaacgtgagctac
aaggaggatgaggagatgaagacggactccgatgacctgctggaggtctgtggagaggac
gtccctcagacggaggacgaggagtttgagacaatagaaaggttcatggattgcagagtc
ggtcggaaaggagctactggtgctactacaaccatttatgctattgaagcagatggtgac
ccaaatgcaggatttgaaaaaaacaaagagccaggagacatacagtatttaattaaatgg
aaaggatggtctcacatccataacacatgggagacggaagaaaccctcaagcagcagaac
gttagagggatgaaaaaattggataattataagaaaaaagatcaggagacaaaacgatgg
ctgaaaaatgcttctccagaagatgtggaatattataattgccagcaagaacttacagat
gacctgcacaaacagtatcagatagtggagcgcataattgctcattccaatcaaaaatca
gcagctggtcttcctgattattattgcaaatggcaggggcttccatactcagagtgcagc
tgggaggacggagctctcatttccaaaaagtttcagacatgcatcgatgaatattttagc
aggaatcagtcaaaaacaacaccttttaaagattgcaaagtattgaaacaaagaccaaga
tttgtagctctgaagaaacaaccatcctatattggaggacatgagggtttagaattgaga
gactatcagctgaatggtttaaactggcttgctcactcttggtgcaaaggaaatagttgc
atacttgctgatgaaatgggccttgggaaaacgatacagacgatctcatttttgaactat
ttgtttcatgaacatcagttgtacgggcctttcctactagtcgtcccgctctccactctg
acttcctggcaaagggagattcagacgtgggcgtctcagatgaatgctgtggtttattta
ggtgacattaacagcagaaacatgataagaactcatgaatggatgcatccccagaccaaa
cggttaaaatttaatatacttttgacaacgtatgagattttgttgaaggataaggcattc
cttggtggtctgaattgggcatttataggtgttgatgaagcacatcgattaaaaaatgat
gattcccttctatataaaacgttaattgattttaaatctaatcaccgtctcctcatcact
ggaacgcctctacagaactccctgaaagagctctggtcactgctgcatttcattatgcca
gagaagttttcttcatgggaagattttgaagaagaacatggtaaaggcagagaatatggt
tatgcaagcctccacaaagagcttgagccatttctgttacgcagagttaagaaagatgtg
gaaaagtctcttcctgccaaggtcgagcagattttaagaatggaaatgagtgctttacag
aaacaatattacaaatggattttaactaggaattacaaagccctcagcaaaggttccaag
ggcagtacctcaggctttctgaacattatgatggagctgaagaaatgctgtaaccattgc
tacctcattaagccaccagataataatgaattctataataaacaggaggccttacaacac
ttaatccgcagtagcgggaaactcattcttctagacaagctgttgatccgtctaagagaa
agaggcaaccgagttctcatcttctctcagatggtgcggatgttagatatacttgcagag
tatttgaagtatcgtcagtttccctttcaaagattagatggatcaataaaaggggagctg
agaaaacaagctctagatcattttaatgctgaggggtcagaggatttctgctttttgctt
tctacccgagctgggggtttaggcattaacttagcctctgcagatactgttgttatattc
gattctgattggaatccacaaaatgatcttcaggctcaggcaagagctcatcgaattggg
cagaagaaacaggtgaatatatatcgcctggttacaaagggatcagttgaagaagatatt
cttgaaagggccaaaaagaaaatggttttggatcatcttgtgattcaaagaatggatacc
actgggaagacagtattgcatacaggctcggctccatcaagttctactcccttcaataaa
gaggaactatcagccattttaaagtttggtgctgaggagctttttaaggagcctgaagga
gaagagcaagagcctcaggaaatggatatagatgagatcttgaagagagctgagactcac
gagaatgagccaggcccgctgactgtcggcgatgagctgctttcccagtttaaggttgcc
aatttttcaaacatggatgaagatgacattgaattggaacctgaaagaaattcaaagaac
tgggaggagatcattccagaagagcaaagacggcggttagaagaggaggagagacaaaag
gagcttgaggaaatttatatgctcccgagaatgagaaactgcgcaaagcagataagtttc
aatggaagtgagggaaggcggagtcgaagcaggagatactcgggttctgatagtgactct
atctcagaaaggaaacggccgaagaaacgtgggagaccacgcaccatccctcgggagaat
attaaaggatttagtgatgcggagattaggcggtttatcaagagctataagaaatttggt
ggccctctggagaggttagatgccattgctcgagatgctgaattggttgataaatcagaa
acagacctcaggagactaggagagctggtgcataatggctgtgtcaaagctttaaaagac
agttcttcaggaacagagcgagcaggtggcagacttggaaaagtgaaggggccaacattc
cgcatatcaggagtacaagtgaatgccaagctggtcattgcccacgaggacgagctgatg
cctttgcacaggtccatcccctcagacccggaggagaggaagcagtatacaatcccatgt
catacaaaggctgctcactttgatatagactggggcaaagaagatgattctaatttgtta
attggcatctatgagtatggttatggaagctgggaaatgattaagatggacccagacctc
agtctaacacacaagattcttccagatgatcctgataaaaaaccacaagcaaaacagtta
cagacacgtgcagactacctcatcaaactacttagcagagatcttgcaaaaaaagaggct
cagagactttccggtgcgggaggttcaaagaggagaaaaacaagagctaaaaagaataaa
gcaatgaagtccatcaaagtgaaagaggaagtaaagagcgactcatcacccctgccttca
gagaagtctgacgaggaggacgagaaagtgaatgactctaagcctgaaagtaaagaccga
tccaaaaagtctgtggtgtccgacgctcctgtccatatcaccgcaagtggagagccggtc
cccatagctgaggagtctgaggagctggatcagaagacattcagtatttgtaaagaaaga
atgagaccagtgaaagcagctttaaaacaacttgacaggcctgagaaaggcctttctgaa
agagagcagctggaacacactagacagtgcttaatcaagatcggagatcacatcactgaa
tgcttgaaggagtattccaatcctgagcagattaagcagtggagaaaaaacctgtggatt
tttgtatctaagtttactgagtttgatgcaaggaaattacataaattatataagcatgct
attaaaaaacgacaagaatctcagcaaaacagtgaccagaatagcaatgttactaccacc
actcatgtaattaggaatccagatgtggaaaggttaaaagagaatacaaatcacgatgac
agcagcagggacagctattcttccgacagacacttgtctcagtaccatgatcatcacaag
gaccgccatcagggagattcttacaagaagagtgactctcggaagagaccctactcgtca
ttcagcaatggcaaagaccatcgtgagtgggatcactacaggcaagacagcaggtactat
agtgacagagagaaacacagaaaactggatgaccacaggagtcgagagcacaggtcaagt
ttggaaggaagcttaaaggacaggtgtcattctgaccaccgatctcactcggaccatcga
gtgcattcagaccatcgctcaagttctgagcacacacatcataaatcttccagggattat
aggtatctctcagattggcaattggaccaccgagttgccagcagtggccctaggtcacct
ttagatcagaggtctccatatggctccaggtccccatttgaacattcaactgaacacaga
agtacacctgaacacacctggagtagtcggaagacataa
DBGET
integrated database retrieval system
