Arvicanthis niloticus (African grass rat): 117700132
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Entry
117700132 CDS
T08817
Symbol
Arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03082
ATP-dependent chromatin remodeling
anu04714
Thermogenesis
anu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117700132 (Arid1b)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
117700132 (Arid1b)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
117700132 (Arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
anu03000
]
117700132 (Arid1b)
03021 Transcription machinery [BR:
anu03021
]
117700132 (Arid1b)
03036 Chromosome and associated proteins [BR:
anu03036
]
117700132 (Arid1b)
Transcription factors [BR:
anu03000
]
Eukaryotic type
Helix-turn-helix
ARID
117700132 (Arid1b)
Transcription machinery [BR:
anu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117700132 (Arid1b)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117700132 (Arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
117700132
NCBI-ProteinID:
XP_034347875
LinkDB
All DBs
Position
Unknown
AA seq
2302 aa
AA seq
DB search
MAHSASAAAAASSNSAQSGGSEAALKEGGSAAALSSSSAVAASSSSAGPGSAMETGLLPN
HKLKAVGEAPAAPPHQQHHHHHAHHHHHHHAHHLHHHHHALQQQLNQFQQPQPPPPQQQQ
QQQPPPPPPQHPTANNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGSQADPQGQPLLSKS
GDEDDAPPKMGEPAGSRYEHPGLGAQQQPAPVAVPGGGGGGPAAVSEFNNYYGSAAPASG
GPGGRAGPCFDQHGGQQSPGMGMMHSASAAAGAPSSMDPLQNSHEGYPNSQYNHYPGYSR
PGAGGGGGGGGGGGGGGGGSGGGGGGGGAGGAGGAAAAAAGAGAVAAAAAAAAAAAAAAA
GGGGGGGGYGGSSSGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGAAAAAGGFQRFAG
QNQHPSGATPTLNQLLTSPSPMMRSYGGSYPDYSSSSAPPPPSQPQSQAAAAAGAAAGGQ
QAAAGMGLGKDLGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQ
LYGMGTHPHSQPQQSSPYPGGSYGPPGAQRYPLGMQSRAPGALGGLQYPQQQMPPQYGQQ
GVSGYCQQGQQSYYNQQPQPSHLPPQAQYLQPQSQQRYQPQQDMSQEGYGTRSQPPLAPG
KSNHEDLNLIQQDRPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPF
SPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQAPGSQSESSSHPA
LSQSPMPQERGFMAGAQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGISNFQQSNSSGTY
GPQMSQYGPQGNYSRTPTYSGVPSASYSGPGPGMGINANSQMHGQGPTQPCGAMPLGRMP
SAGMQSRPFPGNMSSATPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVVQAAANSAQSR
QGSFPGMNQSGLVASSSPYSQPMNNSPSLMSTQAQPYSMTPTMVNSSTASMGLADMMSPS
ESKLSVPLKADGKEEGVPQPEGKSKDSYSSQGISQPPTPGNLPVPSPMSPSSASISSFHG
DESDSISSPGWPKTPSSPKSSSSSTTGEKITKVYELGNEPERKLWVDRYLTFMEERGSPV
SSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQ
YLFAFECKIERGEEPPPEVFSTGDAKKQPKLQPPSPANSGSLQGPQTPQSTGSNSMAEVP
GDLKPPTPASTPHGQMTPMQSGRNSTVSVHDPFSDVSDSAYPKRNSMTPNAPYQQGMGMP
DMMGRMPYEPNKDPFSGMRKVPGSSEPFMTQGQVPNSSMQDMYNQSPSGAMSNLGMGQRQ
QFPYGTSYDRRHEAYGQQYPGQGPPTGQPPYGGHQPGLYPQQPNYKRHMDGMYGPPAKRH
EGDMYSMQYGSQQQEMYSQYGGSYSGPDRRPIQGQYPYPYNRERMQGPGQMQPHGIPPQM
MGGPMQSSSSEGPQQNMWAARNDMPYPYQNRQGPGGPAQAPPYPGMNRTDDMMVPDQRIN
HESQWPSHVSQRQPYMSSSASMQPITRPPQSSYQTPPSLPNHISRAPSPASFQRSLESRM
SPSKSPFLPSMKMQKVMPTVPASQVTGPPPQPPPIRREITFPPGSVEASQPVLKQRRKIT
SKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYF
RKCLIDIFGILMEYEVGDPSQKALDHRAGKKDDSQSSEDDSGKDDGDDECLEEEEEEEEE
EEEDSEKMESQGKSSAAPAVLDATVDPKETPKQASKFDKLPIKIVKKNNLFVVDRSDKLG
RVQEFNSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPPLSSTGKKKELEGRGDSEE
QPEKSIIATIDDVLSARPGALPEDTNPGPQADSGKFPFGIQQAKSHRNIRLLEDEPRSRD
ETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPE
RKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLP
ILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSR
QEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKGSIGNLISFLEDGV
TMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISI
SAVLNSLVASVICDVLFQIGQL
NT seq
6909 nt
NT seq
+upstream
nt +downstream
nt
atggcccatagcgcgagcgccgcggccgccgccagctccaacagcgcgcagagcggcggc
tccgaggcggctctcaaggagggtggaagcgccgccgcgctgtcctcctcctccgccgtc
gcggcctcttcctcctcggcgggccccggctcggccatggagaccgggctgctccccaac
cacaaactgaaagccgttggcgaggcccccgctgcaccgccccatcagcagcaccaccac
caccatgcccaccaccaccatcaccaccatgcccaccacctccaccaccaccaccacgca
ctacagcagcagctaaaccagttccagcagccgcagccgccgccgccacagcagcagcag
cagcagcagccgccgccgccgccgccgcagcatcccactgccaacaacagcctgggcggt
gcgggcggcggcgcgcctcagcccggcccggacatggagcagccgcaacatggaggcgcc
aaggacagtgccgcgggcagtcaggctgacccgcagggccagcctctgctgagcaagtcg
ggcgacgaggacgacgcgccgcccaagatgggggagccggcgggcagccgctatgagcac
ccgggcctgggcgcgcagcagcaacccgcgccggtcgccgtgcccgggggcggcggcggc
ggcccggcggccgtctcggagtttaataattactatggcagcgctgcccctgctagcggc
ggccccggcggccgcgctgggccttgctttgatcaacatggcggacaacaaagccccggg
atggggatgatgcactccgcctctgccgccgccggggcccccagcagcatggaccccctg
cagaactcccacgaagggtaccccaacagccagtacaaccattatccgggctacagccgg
cccggcgcgggcggcggcggcggcggcggaggaggaggaggaggaggaggaggaggcagc
ggaggaggtggaggaggaggaggagcaggaggagcaggaggagcagcggcagcggcagca
ggagccggagctgtggcggcggcggccgcggcggcggcggcagcggcagcagcagcagca
ggaggaggaggcggtggcggcggctatgggggctcgtcctcggggtacggggtgctgagc
tccccgcggcagcagggcggcggcatgatgatgggccccgggggcggcggggccgcgagc
ctcagcaaggcggccgccggcgcggcggcggcggcggggggcttccagcgcttcgcgggc
cagaaccagcacccgtcgggggccacgccgaccctcaaccagctgctcacctcgcccagc
cccatgatgcggagctacggcggcagctaccccgactacagcagctccagcgcgccgccg
ccgccgtcgcagccccagtcccaggcggcggcggcggcgggggcggcggcgggtggccag
caggcggccgcgggcatgggcttgggcaaggacctaggcgcccagtacgccgctgccagc
ccggcctgggcggccgcgcaacaaaggagtcacccggcgatgagccccggcacccccgga
ccgaccatgggcagatcccagggcagtccaatggacccaatggtgatgaagagacctcag
ttgtatgggatgggtactcacccccattcccagccgcagcagagcagcccatacccagga
ggctcctatggtcccccaggagcacagcggtatccccttggcatgcagagtcgggctcca
ggggccctgggaggcttgcagtacccacagcagcagatgccaccgcagtatggacagcaa
ggtgtgagtggttactgccagcaaggccagcagtcatattataaccagcagccacagccc
tcacacctcccgccccaggcacagtacctccagccgcagtcccagcagaggtaccagcca
cagcaggacatgtctcaggaaggctatggaactagatctcagcctcctctggcccctgga
aaatccaaccacgaagacttgaatttaatacaacaggacagaccatcgagtctaccagac
ctgtctggctcaattgatgacctccccacgggaacagaagcaactctgagctcagcagtc
agtgcgtccgggtctacaagcagccagggggatcagagcaacccagctcagtcgcctttc
tccccacatgcatcaccccatctctccagcatccctggagggccatcaccttctcctgtt
ggctctcctgtgggaagcaaccaatcgaggtctggtccgatctcccccgcgagtattcca
ggcagccagatgcctccacaagcacctggaagccagtcagaatccagttcccatcctgcc
ttgagccagtcaccaatgccacaggaaagaggttttatggcaggcgcacagagaaaccct
cagatgtctcagtacggacctcagcagacaggaccctccatgtcgcctcacccttctcct
gggggccagatgcatcctgggatcagtaactttcagcagagtaactcaagtggcacgtac
ggtccacagatgagccagtatggaccccaaggcaactactccagaaccccaacgtatagc
ggggtgcccagtgcaagctacagtggccctgggcccggtatgggcatcaatgccaacagc
cagatgcatggacaagggccaacccagccatgtggtgctatgcccctgggacgaatgcct
tcagccgggatgcagagcagaccatttcctggaaacatgagcagcgccacccccagttct
cctggcatgtctcaacagggagggccaggaatgggcccaccgatgcccactgtgaaccgt
aaggcccaggaagctgccgcagctgtggtgcaggccgctgcaaactcagcacaaagcagg
caaggcagttttcctggcatgaaccagagtggcctcgtggcctccagctctccctacagc
cagcccatgaacaacagccccagcctgatgagcacccaggcccagccctacagcatgaca
cccacgatggtgaacagctccacagcatccatgggtcttgcagatatgatgtctcccagt
gagtccaaactgtccgtgcctcttaaagcagatggtaaagaagaaggtgtgccccaacct
gagggcaagtcaaaggacagctacagctctcagggtatctctcagcctccaaccccaggc
aacctgcccgtcccttccccaatgtcccccagctctgccagcatctcctccttccacgga
gatgagagtgatagcattagcagcccaggctggcccaagactccatcaagccctaagtcc
agctcgtcttccaccactggggagaagatcacaaaagtgtatgaactggggaatgagcca
gagaggaagctgtgggtcgaccggtacctgacgttcatggaggagaggggctctccagtc
tccagtctgccagcagtgggcaagaagcccctggacctgttccgactctatgtctgcgtc
aaagagattggaggcttggcgcaggttaataaaaacaagaagtggcgtgaactggcaacc
aacctaaacgttggcacttcaagcagcgcggccagctccctgaaaaagcaatatattcag
tacctgtttgcctttgagtgcaaaattgagcgtggggaggagcccccgcctgaagtcttc
agcaccggggatgcgaagaaacagcccaagctccagccgccatctcctgctaactcagga
tccttacaaggcccacagactccacagtcaactggcagcaattcaatggctgaggttcca
ggtgacctgaagccaccaactccagcctctacccctcacggacagatgacccccatgcaa
agcggaagaaacagtacagtgagtgtacatgacccattctccgatgtgagtgattcagca
tatccaaaacggaactccatgactccaaatgccccgtaccagcagggcatgggcatgcca
gacatgatgggcagaatgccctatgaacccaacaaggaccctttcagtggaatgagaaaa
gtgcctggaagtagtgagccctttatgacacaaggacaggtgcccaacagcagcatgcag
gacatgtacaaccagagcccctccggcgccatgtccaatctgggcatgggacaacgacag
caatttccctatggaaccagttatgaccgaaggcatgaggcttacgggcagcagtaccca
ggccaaggccctcccacaggacagccgccgtatggaggacaccagcccggcctgtaccca
cagcagccgaattacaaacgccatatggatggcatgtatgggcctccagccaagcggcac
gagggagacatgtacagcatgcagtatggcagccagcagcaggagatgtatagccagtac
ggaggctcctactctggcccggacagaaggcccatccagggacagtatccctacccctac
aacagagaaaggatgcagggcccaggccagatgcagccacatggaatcccacctcagatg
atgggtggccccatgcagtcatcctccagtgaggggcctcagcagaatatgtgggctgca
cgcaacgatatgccttatccctaccagaacaggcaaggcccaggcggccctgcacaggca
cccccttacccaggcatgaaccgcacagatgacatgatggtacctgatcagaggatcaat
cacgagagccagtggccttctcatgtcagccagcgccagccttacatgtcatcttcggcc
tccatgcagcccatcacacgcccacctcagtcatcctaccagacgccaccatcactgcca
aaccacatctccagggctcccagccccgcctccttccagcgctccctggagagtcgcatg
tctccaagcaagtctcccttcctgccctccatgaagatgcagaaggtcatgcctacagtc
cccgcctcccaggtcactggaccacccccacagccaccgccaatcagaagggagattacc
tttcctcctggctctgtagaagcatcacagccagtcctgaaacaaaggcgaaagattacc
tcaaaagatattgttactcctgaggcatggcgggtgatgatgtccctcaaatcgggtctg
ttggctgagagcacgtgggccttggacaccatcaacattctcctctatgacgacagcacc
gtcgccaccttcaatctttcccagctgtctggattcctggaactattagtagagtacttt
cgaaaatgcctaattgacatttttggcattcttatggaatatgaagtgggtgaccccagc
cagaaggcgctcgatcaccgtgcagggaagaaagatgacagccagtcttcggaagacgat
tctgggaaagatgatggtgatgatgagtgtcttgaggaggaggaggaagaagaggaagag
gaggaggaagacagtgaaaagatggagtcacaggggaagagcagcgctgctccagctgtt
ctcgatgccactgtggaccccaaggagacgccaaagcaggccagtaagtttgacaagctg
cccataaagattgtcaaaaagaacaacctgtttgtggtggaccggtcagacaagctgggg
cgagtgcaggagttcaacagcgggcttctccactggcagctgggtggtggcgacactacg
gaacatatccagactcacttcgagagcaagatggagatccctcctcgcaggcgtccacct
ccgcctctaagctccacgggtaagaagaaggagctggaaggcagaggtgattctgaagag
cagcccgagaaaagcatcatagccaccatcgatgacgtcttatctgccaggccaggggcc
ctgccggaagacaccaacccaggaccccaagccgacagtggcaagtttccctttggaatc
caacaggccaaaagccaccggaacatcaggctcctggaggacgagcccaggagccgagat
gagacgccactgtgcaccatcgcgcactggcaggactcactggccaagcgctgcatctgt
gtgtctaacatcgttcggagcttgtctttcgtgcctggcaacgacgcagagatgtccaaa
cacccgggcttggtgctgatcctaggaaagctgattctgctgcatcacgagcatccggag
agaaagcgggcgccacagacctacgagaaggaggaagatgaggacaagggggtggcgtgc
agcaaagacgagtggtggtgggactgcctcgaggtcttgcgggataacaccctggtcacg
ctggcgaacatttccgggcagctagacttgtctgcttacacagagagcatctgcttgccg
atcctggacggcttgctgcactggatggtgtgcccgtccgcggaggcacaggaccccttt
cccactgtggggcccaactcagtcctatcgccgcagagacttgtgctggagaccctgtgt
aaactcagtatccaggacaacaacgtggacctaatcttggccacacctccatttagtcgt
caggagaaattttatgctacattagttaggtacgttggggatcgcaaaaacccagtctgt
cgagaaatgtccatggcgcttttatcgaaccttgcccagggggacacactggcagcgagg
gcaatagctgtgcagaaagggagcattggaaacttgataagcttcctagaggatggggtc
acgatggcgcagtaccagcagagccagcataaccttatgcacatgcagcccccacctctg
gaaccccctagtgtagacatgatgtgcagggcggccaaagctttgctggccatggccaga
gtggacgaaaaccgctcggagttccttttgcacgagggtcggttgctggatatctccata
tcagctgtcctgaactctctggttgcatctgtcatctgtgatgtactgtttcagattggg
cagttatga
DBGET
integrated database retrieval system
