Arvicanthis niloticus (African grass rat): 117700252
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Entry
117700252 CDS
T08817
Symbol
Afdn
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04014
Ras signaling pathway
anu04015
Rap1 signaling pathway
anu04024
cAMP signaling pathway
anu04520
Adherens junction
anu04530
Tight junction
anu04670
Leukocyte transendothelial migration
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04014 Ras signaling pathway
117700252 (Afdn)
04015 Rap1 signaling pathway
117700252 (Afdn)
04024 cAMP signaling pathway
117700252 (Afdn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
117700252 (Afdn)
04530 Tight junction
117700252 (Afdn)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
117700252 (Afdn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_3
RA_2
PDZ_2
Yop-YscD_cpl
RASSF8-10_RA
Motif
Other DBs
NCBI-GeneID:
117700252
NCBI-ProteinID:
XP_034348023
LinkDB
All DBs
Position
Unknown
AA seq
1840 aa
AA seq
DB search
MSAGGRDEERRKLADIIHHWNANRLDLFEISQPTEDLEFHGVMRFYFQDKAAGNFATKCI
RVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERRLDIDEKPLVVQLNWNK
DDREGRFVLKNENDAIPAKKTQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKKREKEALRQ
ASDKEERPSQGDDSENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRS
SDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDPADFAVAESLEKYGLEKENPKDYCIAR
VMLPPGAQHSDERGAKEIILDDDECPLQIFREWPSDKGILVFQLKRRPPDYIPKKMKKHV
EGKPLKGKDRTDGSGYGSALPPEKLPYLVELSPGRRNHFACYSYHTYEDGSDSRDKPKLY
RLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISE
TTMLQSGMRLQFGTSHVFKFVDPIQDHILSKRSVDGGLMVKGPRHKPGAVQETTFDLGGD
IHSGTALPASRSTTRLDSDRVSSASSTVERGMVKPMIRLDQEQDYRRRESRTQDAAGPEL
ILPASIEFRESSEDSFLSAIINYTNSSTVHFKLSPTYVLYMACRYVLSSQHRPDISPTER
THKAIAVVNKMVSMMEGVIQEVDQVDQKQKNIAGALAFWMANASELLNFIKQDRDLSRIT
LDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPEENSLQRPKIDDVLHTLTGAMSL
LRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAIIRQQLGHIEAWAEK
QGLELAADCHLSRIVQATTLLTMDKYVPDDIPNINSTCFKLNSLQLQALLQNYHCAPDEP
FIPSDLIENVVAVAENTADELARSDGRDVQLEEDPDLQLPFLLPEDGYSCDVVRNIPNGL
QEFLDPLCQRGFCRLVPHTRSPGTWTIYFEGADYESHLMRENTELAQPLRKEPEIITVTL
KKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQE
RAAELMTRTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQRISDRRGSGKPRPKSEGFELY
SNSAQNGSPESPQMPWTEYSEPKKLPGDDRLMKNRADHRSSPNVANQPPSPGGKSPYTSG
TAAKITSVSTGNLCTEEQTPPPRPEAYPIPTQTYTREYFTFPASKSQDRMAPPQNQWPNY
EEKPHVHTENNHSSIAIQRVTRSQEELREEKVYQLERHRVEPGMDRKCDSDMWINQSSSV
ESSTSSQEHLNHSSKSVTPASTLTKSGPGRWKTPAAVLPTPVAVSQPIRTDLPPPPPPPP
VHYTSDFDSIPMDLPLPPPPANQAGSQSAQVAAAERKKREEHQRWYEKEKARLEEERERK
RREQERKLGQMRTQSLNPASFSPLATQAKPEKPSTLQRPQETVIRELQPQQQPRTIERRD
LQYITISKEELSSGDSLSPDPWKRDAREKLEKQQQMHIVDMLSKEIHELQNKVDRTAEES
DRLRKLMLEWQFQKRLQESKQKDEDDDEEEDDDVDTMLIMQRLEAERRARQTAMPAISVL
DLMQDEERRRQQQLEEIRKREAEDRVRQEEDGRHQEEERVKRDAEEKRRQEEGYYSRLEA
ERRRQHEEAARRLLEPEEPGLSRPPLPRDYEPPSLSTAPSAPPPPPQRNASYLKTQVLSP
DSLFTAKFVAYDDDDEDYGPAGPTSYSGSANTAAGAYDAPREAREKHARSQDADLPGSSG
APENLTFKERQRLFSQGQDVSDKVKASRKLTELENELNTK
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgggcggccgcgacgaagagcggcggaagctggccgacatcattcaccactgg
aacgccaaccggctggacctgttcgagatcagccagccgaccgaggatttggagtttcat
ggagtcatgagattttattttcaagataaagctgctggaaactttgcaacaaaatgtatt
cgggtctctagcacagcaaccactcaagatgtgattgaaacactggccgagaagttccgc
cctgatatgcgcatgctctcttctcccaagtactccctctatgaagtgcatgtcagtgga
gaagaaagaagattggacattgatgagaaacctctagttgtacagttgaattggaacaaa
gatgatcgggagggtagattcgtccttaagaacgagaatgatgccattcctgccaagaag
actcagagtaatggacctgaaaagcaggagaaagaaggtgttattcagaacttcaaaaga
acactctcaaagaaagaaaagaaggaaaaaaagaagagagagaaggaggcattgagacaa
gcctctgataaggaagaaaggccttctcaaggggatgacagtgagaattctcgactggct
gctgaagtttacaaagacatgcctgaaaccagctttactcgcacgatttctaatcctgaa
gttgttatgaaacggaggcggcagcaaaaactggagaagagaatgcaagagtttcggagc
tcagatgggcgccctgactcgggtggaacactgagaatatatgcagacagtttgaaacca
aatattccatacaagacaatcctgctgtctactacagatcctgcagactttgctgtagca
gagtctttggagaaatatggtctggaaaaagagaatcccaaggactactgcattgcccgg
gttatgcttcctcctggagcccaacattctgatgagagaggtgctaaggaaatcattctt
gatgacgatgaatgtcctttacagatcttcagggaatggccaagtgataaagggatttta
gtctttcagttgaagaggagacctccggactacatcccaaagaaaatgaagaaacatgtt
gaagggaagccattgaaggggaaagatagaactgatgggtctggctacggctctgctctt
cctcctgagaagctgccctacctagtagagctaagcccagggagaaggaatcactttgcc
tgctacagctatcacacttacgaagatggctctgactccagagacaagccaaagttatac
cgtcttcaattaagtgtgactgaagttgggacagagaagttcgatgacaattctatccag
ctgtttggccccggaattcagccccatcactgtgatctcaccaacatggatggagtggtc
actgtgacacccagaagtatggatgcagagacctacgtggatggtcagcgcatctcagag
accacaatgctgcagagtggcatgagactgcagtttggcacctcgcatgtgtttaagttt
gtggaccccatccaggaccacattctttccaagagatctgtggatggaggcctgatggtc
aagggcccaagacataaacctggagctgttcaagagacaacctttgatttgggaggagat
atccacagtgggacagcactgccggcaagcaggagcaccactagactggacagtgacagg
gtgtcctctgcctccagcacagttgagcgagggatggtaaagccgatgatccgactggac
caggagcaggattatcgacgaagagaaagcaggactcaggatgctgctgggcctgaactg
atactgcctgccagcattgaattcagagaaagctctgaagattcttttttatctgccatt
ataaactataccaatagctctacagttcattttaaactgtcacctacatatgtgttatat
atggcatgccggtatgtattgtccagccagcacaggcccgacatcagtcctacagagcgt
acacataaggccattgctgttgtcaacaagatggtgagcatgatggaaggggtcatccag
gaagtagaccaggttgatcagaaacagaagaatattgcaggagcgcttgccttctggatg
gcaaatgcatctgagcttctcaacttcatcaagcaggaccgggaccttagtcggattacg
ctggatgcccaggatgttctagcacacttggttcagatggcatttaagtacttggttcat
tgccttcagtcagaacttaataactacatgccagcctttctggatgatcccgaggagaac
agtctgcaaagaccaaaaatagatgatgtgctgcacacactcacaggagccatgtccttg
ttgcgacgctgcagagtcaatgctgccctgaccatccagctgttctctcagcttttccac
ttcatcaatatgtggctgttcaacagactggtgactgacccagattcaggcctgtgttcc
cactactggggtgcaattatccgccagcagctggggcatattgaagcttgggcagagaag
caggggctagagctggcagctgactgtcacttgagcaggatcgtgcaggctactacattg
cttacgatggataagtatgtacctgatgacattccaaacataaacagcacctgctttaag
ttaaattctctgcagcttcaagccttgttacaaaattaccactgtgcacccgatgagcct
tttattccttcggatctcatagaaaatgttgtggctgttgctgagaacacggctgatgag
cttgcgcgcagcgatggcagagacgtgcagttggaggaggaccctgacctacaactgcct
tttcttttgccagaagatggctattcctgtgatgttgtcagaaacattccaaatggttta
caagaatttttagaccctctgtgccagagagggttttgtaggttggttcctcatacacgt
tcaccaggtacctggacaatatatttcgaaggagcagattatgaaagtcacctaatgcgt
gagaacacagaactggcccagcctctgaggaaggagcctgagataatcactgtgacgctg
aagaagcagaatggaatgggtctcagcatcgttgcagcaaagggtgccggccaggataaa
ctgggaatctacgttaagtcggttgtcaaaggaggtgccgcagatgtggatggacgacta
gctgctggtgaccagctccttagtgtggatggacgaagtctggttggactttctcaggaa
agggcagcagaactcatgacaagaaccagttccgtggttacactggaagttgcaaagcaa
ggcgccatttatcacggcctggccaccctccttaaccagccatcccccatgatgcagaga
atttcagatcgtcgtggctcaggtaaacccagaccaaagagtgaaggttttgagctctat
agtaattcagctcaaaacggctccccagagagtcctcagatgccttggacagagtacagt
gagccaaagaagctgcctggtgatgacaggctgatgaaaaacagagcagaccaccgttcc
agccccaatgtggcaaatcagcctcctagccctggagggaagagtccttatacatctgga
acagcagctaagataacatctgtctccactggaaacctctgcactgaggagcagactcct
ccacctagacctgaagcctatcctatccctactcagacatacaccagagagtattttacc
tttccagcttcaaagtcgcaggatcggatggctcctcctcagaaccagtggccaaattat
gaggaaaagccacatgtgcatacagaaaataatcactccagtattgcaatccagcgtgtt
acccgttcccaggaagagcttcgggaagagaaggtttaccaacttgagcggcatcgagta
gagcctggcatggatcgcaagtgtgacagtgatatgtggatcaatcagagctcttccgtg
gaatccagcacatctagccaggagcacctgaaccattcctccaagtcagttacccctgct
tccactctgaccaagagtggtcctggccgttggaaaaccccggcagcggtgctgcccacc
cctgtagctgtctctcagcccattcgaacagacctccctccacctccaccaccaccaccg
gtccattacaccagtgattttgatagtattccaatggatttgcctctcccacctcctcct
gccaaccaggcgggatcccagtctgctcaggtggctgctgcagagcggaaaaagagagag
gaacatcagaggtggtatgagaaagagaaggcccgcctggaggaggaacgagagaggaag
cgcagggagcaggaacggaagttggggcagatgcgtactcagtccctgaaccctgcttcc
ttctctcctttggccacgcaggccaagccagaaaagccttccacactgcagaggccccaa
gaaacagtcattcgggagctgcagccccagcagcagccccgcacgattgagcgcagggat
ctgcagtacataaccatcagtaaagaggagctgtcttctggggatagtctgtctccagac
ccctggaaacgagatgccagggagaagctggagaagcaacagcaaatgcacattgtggac
atgctaagcaaggagatccatgagctgcaaaacaaggtggaccgtactgcagaggagagc
gaccgcctgcggaaacttatgctggagtggcagttccagaagagactgcaggagtccaag
cagaaggatgaggatgatgacgaagaggaagatgatgacgtggacaccatgctgatcatg
cagcgcctggaggctgagcggagagccaggcagactgctatgccagcaatctctgttcta
gatttgatgcaggatgaggagcgcaggcgccaacaacagttggaagaaattcgcaaacga
gaagcagaagatcgtgtaagacaagaagaagatggacgccatcaggaggaggagcgagta
aagagagatgctgaagaaaagaggcgacaggaagaagggtattacagccgcctagaagct
gagaggcgcagacagcacgaagaggcagctcgcaggttgctggagcccgaagagcctggg
ctgagccgtcctccacttccacgggactacgagcccccatccctatccacagcacccagt
gcccctcctcccccacctcagcgaaacgcctcctacctcaaaacacaggtcctctcccca
gactcgctgttcactgccaagtttgttgcatatgatgatgatgatgaggactacggccca
gcaggaccaacgtcttattcgggatctgctaacacagctgcgggagcgtatgatgctcct
cgagaagcaagagagaaacacgctagaagccaagatgcagacttacctggcagttctgga
gcccctgaaaacctgacatttaaggagcgtcagcgccttttttcacaagggcaagatgtg
tctgacaaagtgaaagcttctcgtaaattaacagagcttgagaatgaactgaacaccaag
tga
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integrated database retrieval system
