Arvicanthis niloticus (African grass rat): 117700880
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Entry
117700880 CDS
T08817
Symbol
Hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03015
mRNA surveillance pathway
anu05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117700880 (Hbs1l)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
117700880 (Hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117700880 (Hbs1l)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117700880 (Hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GIP1_N
AAA_29
Motif
Other DBs
NCBI-GeneID:
117700880
NCBI-ProteinID:
XP_034348559
LinkDB
All DBs
Position
Unknown
AA seq
682 aa
AA seq
DB search
MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDNSEEEYGYEDLKES
SNSLLNHQLSEIDQARLYSCLDHMREVLGDAVPNDILTEAILKHKFDVQKALSMVLEQDG
VQTLKEKSERAVCAGQPSKGKSVISRSSQSESEIVPKAAKMTISGKKQTMGFEVPGLTSE
ENGHNVRTPHKGPPGDDVSIASPNVPETGTPKPALPPSSVQTSEELGSTPTPVRKSGKLR
QQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKA
GKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQA
DVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEIT
GKLGHFLKQAGFKDSDVAFIPTSGLSGENLTARSQSSDLTKWYKGLCLLEQIDSFKPPQR
SIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVD
WAAAGDHVSLTLVGMDIIKINVGCIFCGPKEPIKACTRFRARILIFNIEVPITKGFPVLL
HYQTVSEPAVIKRLISVLNKSTGEVMKKKPKLLTKGQNALVELQTQRPVALELYKDFKEL
GRFMLRYGGSTVAAGVVTEIKE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcatcggaacgtccggggctataactacgatgaagattttgaagatgatgat
ttgtacggtcagtctgtggaggatgattattgtatttcaccatcaacagctgctcagttt
atttactcacgacgtgacaactctgaagaagaatatggttatgaagatctgaaagagtct
tccaattctctcttgaatcaccaattaagtgaaattgaccaagcacgcctttattcatgc
cttgatcacatgagagaggtactgggggacgctgtgcccaatgacatactgactgaggca
attctgaaacacaagtttgatgtgcagaaggctttgtccatggttctggaacaagatggt
gtgcagactttgaaggagaagagtgagcgagcagtgtgtgcgggacagccttcaaaagga
aaatcagttatatctcggtcatcccagagtgaatctgaaattgtgccaaaagctgctaaa
atgaccatatctgggaagaagcagaccatgggatttgaagtgcctggcttaacttctgag
gaaaatggacacaatgtgcgtactcctcacaaaggacctcctggtgatgatgtgagcatt
gcttctcctaatgttcctgagactggcactccaaaacctgccctcccaccttcctccgtt
caaacgtcagaagagctgggctccactccaacaccagtgagaaagtctggcaagctgagg
cagcagatagacgtgaaagcagaactggagaagcggcagggcgggaagcagctcctcaac
ttagtggtcattggtcatgtcgatgctgggaaaagtactctgatgggccatatgctttat
cttctgggtaatgtaaacaagaggactatgcataagtatgagcaagaatctaaaaaggct
ggcaaggcttcgtttgcgtacgcgtgggtcttggatgaaactggagaagaaagggagagg
ggagtaacaatggatgtaggcatgacgaagtttgaaaccacaaccaaagttattacgtta
atggatgctccaggccataaggatttcattccaaacatgatcacaggagcggcccaggct
gacgtcgctgtcttggtcgttgatgccagcaggggagagtttgaagctggatttgagacg
ggaggacagacgcgagagcatggccttttggtccgatctcttggagtgacacagcttgct
gtggccgtcaataaaatggatcaggtaaactggcaacaagaaagatttcaggagattact
ggaaaacttgggcactttctcaagcaggcaggttttaaggacagtgatgtggcttttatt
cccacaagcggtctgagtggtgagaatttaacagcaaggtcacagtccagtgacctcacg
aagtggtacaaagggctgtgcttattggagcagattgattccttcaagccccctcagcgc
tctatcgacaaaccttttagattatgtgtgtctgatgtcttcaaagatcaaggatctggc
ttttgtgtgactggtaaaattgaagctggttacatccagactggcgatcgactattagcc
atgccgcccaatgaaacctgtactgctaaaggaatcactctgcacgacgagcctgtcgat
tgggcagcagcaggcgatcacgttagtcttactttggttgggatggatatcatcaaaatc
aatgttggctgcatattttgtggccccaaagaacccattaaggcttgcacccgcttcaga
gcccggatccttatcttcaatattgaagttcctatcactaaagggtttcctgtgctgtta
cactaccaaaccgtcagtgagcctgctgttattaagcgattgatcagtgtcctaaacaaa
agtactggggaagtcatgaagaagaagcccaagttgctgaccaagggccagaacgccttg
gtagagctgcagacacaaagacctgtggctcttgagctctacaaagacttcaaggagctg
ggccggtttatgctgcgttatggtggctccacggtagctgccggtgttgtcactgagata
aaagagtga
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