Arvicanthis niloticus (African grass rat): 117702655
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Entry
117702655 CDS
T08817
Symbol
Nup188
Name
(RefSeq) nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03013
Nucleocytoplasmic transport
anu05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117702655 (Nup188)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
117702655 (Nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117702655 (Nup188)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117702655 (Nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
117702655
NCBI-ProteinID:
XP_034349665
LinkDB
All DBs
Position
2:7491571..7550502
Genome browser
AA seq
1753 aa
AA seq
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MAAATGGPCVRSSRELWTILLGRSALRELNQIEEELNKYWQRLLEGLSYYKPPSPSSAER
VKANKDVASPLKELGLRVSKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQA
LTLKIADYYYEERTCILRCVLHLLTYFQDERHPYRAEYADCVDKLEKELVLKYRQQFEEL
YRTEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMAPSDLLVLTKMFK
EQGFGSRQTNRHLVDETMDPFVDRIGYFSALILVEGMDVESLHKYALDDRRELHQFAQDG
LICQDMDRVMLTLGDIPHHAPVLLAWALLRHTLNPEETSSVVRKIGGTAIQLNVFQYLTR
LLRSLASGGNDCTTSTACMCVYGLLSFALTSLELHTLGNQQDVIDTACEVLADPSLPELF
WGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKMSFYNELHKH
KPHDVLSHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWT
LFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRL
TTVISPPVNVIASCVNCLTVLAAGNPAKVWTDLRHTGFLPFVAHPVSNMTQMISAEGMNA
GGYGNLLMNSEQPQGEYGVTIAFLRLVTTLVKGQLGSTQSQGLVPCVMFVLKEMLPSYHK
WRYNSHGVRELIGCLILELIHAILNLCQETELHSSHTPSLPSLCICSLAYTEAGQTVISI
MGIGVDTIDMVMAAQPRSDGPEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQA
LTQHGAHGNNLIAVLAKYIYHRHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDA
FLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSNGSKEFSLGVWSCLH
VVLELIDSQQQDGYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTSPLFGT
LSPPSETSEPSILETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFASEKRFAYWSGYVK
SLAVYMAETEGSSCTSLLEYQMLVSAWRMLLIIATSHADIMHVTDMAVRRQLFLDVLDGT
KALLLVATSVNCLRLGSMMCTLLLILLRQWKRELGAVDKILGPLTEILEGVLQADQQLME
KTKAKVFSAFVTVLQMKELRVSDIPQYSQLVLNVCETLQEEVIALFDQTRHSLASGSAAE
DKDSMETDDCPRPRHKDQRDGVCVLGLHLAKELCEADEDGDSWLQVTRRLPVLPTLLTTL
ELSLRMKQNLHFTEAALHLLLTLARTQQGATAVAGAGITQSICLPLLSVYQLSSNGTGQA
PSTSRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERTLQCLSAVRTV
QSLACLEEADHTVGFILQLSHFRKEWHFHLPQLMRDVQVNLGYLCQACTSLLHSRKMLQH
YLQNKNGDGLPSAVTPRVQRPSTTTTVVATPSGCSSKQPSADTEALEQRALHTVQYGLLK
ILSRTLAALRHFTPDVCQILLDQSLDLAEYNFLFALSFTTPTFDSEVAPSFGTLLATVNV
ALNMLGELDKKKESLTQAVGLSTQAEGTRTLKSLLMFTMENCFYLLISQAVRYLRDPAVH
PRDKQRMKQELSSELSTLLSSLSRYFRRGAPSSPAAGVLPSPQGKATSLSKASPESQEPL
IQLVQAFVRHVQR
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgccaccggtgggccgtgtgtgaggagcagtagagaactctggacaattcta
ctcgggaggtcagctcttagagagttgaatcagattgaggaggaactcaataaatattgg
cagcggttgttagaagggctttcttactacaaacctcccagtccaagttcagctgaaaga
gtgaaagctaataaagatgtagcgtcacctctgaaggagctgggcttaagagtcagcaaa
ttcttgggtcttgatgaagagcagagtgtgcagctgctgcagtgttaccttcaggaggat
tacaggggtactcgggactcactaaagacagtcctgcaagatgagaggcagagccaggcc
ttaaccctcaagattgcagattattattatgaagaaagaacgtgcattcttcgttgtgtc
ttacatcttctgacatatttccaagatgaacgccatccctacagggctgaatacgctgac
tgtgttgacaagctggagaaggagctggttttaaagtaccgacagcagtttgaggagctg
tatagaacagaagccccgacctgggagacgcatggcaacctgatgactgagcgccaggtg
tctcgatggtttgttcagtgcctccgggaacagtccatgctactagaaattattttcctc
tattatgcatacttcgagatggcacctagtgacctactggtactaaccaagatgttcaag
gagcaagggtttggtagtaggcagaccaatagacaccttgtggatgaaaccatggatcct
tttgtagatcgaattgggtacttcagtgcccttatcctggtggaagggatggatgttgag
tccttgcataagtacgccttggacgacaggagagagctgcaccagtttgctcaggatggg
cttatctgccaggatatggatcgtgtgatgttgaccttaggagacattccgcaccatgcc
cccgtgcttttggcctgggctctcctccgtcacacactaaacccagaagagaccagcagc
gtggtcaggaagatagggggcacggccatccagctgaacgtatttcagtacttgactcga
ctgcttcggtctcttgccagcgggggaaatgattgcaccacaagtaccgcctgcatgtgt
gtctatggtcttctctcctttgctctcacctccctggagctgcacacactgggcaaccag
caggatgtaattgacacagcatgtgaagtcctggcagacccttctcttccagagttgttc
tggggaacagagccaacctctggtcttgggatcattctggacagtgtgtgtgggatgttt
ccccatctcctttccccgcttctgcaactgctccgagcccttgtgtcagggaagtccact
gccaaaaaggtgtacagtttcctggacaaaatgtctttctacaatgaacttcataagcac
aagccccatgatgtgctctctcatgaagatggaactctgtggcggaggcagacacccaaa
ctcctgtaccctctagggggtcagaccaaccttcgaattcctcagggcactgtgggccaa
gtcatgctggatgatagggcttacctggtccgctgggaatactcatacagcagctggacc
ctcttcacatgtgagatcgagatgctgctccacgtggtctccacggcagatgtgatccag
cactgccagcgggtcaagcccatcattgatttggttcacaaggtcatcagcacagacttg
tccatagcagactgcctgctgcccatcacatcccgcatctacatgctgctgcagcggctc
acgacggtgatttcccctccggtaaacgtcattgcttcttgtgtcaactgcctaactgtc
ttggctgctggaaatccagcaaaggtctggactgatcttcgtcacacaggttttttgccg
tttgtggcccaccctgtctccaacatgactcagatgattagtgcggagggaatgaatgct
ggagggtatggcaacctcctgatgaacagtgagcagccccagggcgagtatggcgtcacc
attgcctttctgcgcctggtcaccactcttgtcaaggggcagcttggtagtacccagagc
caaggcttggtgccttgtgtgatgtttgtgttgaaggagatgcttcccagctaccacaaa
tggcgctacaactctcatggcgtgagggagctgataggttgcctaattctggagctgatt
catgcaatactgaacctgtgccaagagacagagctgcatagcagccatactcccagcctg
ccttccctctgcatctgcagcctggcttatacagaagctggacagaccgtcatcagcatc
atgggaattggtgtggacaccatagacatggtgatggctgctcaaccccgcagtgatggg
ccagaaggccagggccagggccaactgctgatcaagacagtgaagctggcgttctctgtc
accaacaatgttattcggctgaaacctccttctaatgtggtgtcccccctggaacaggct
ctcacacagcatggtgcccacgggaacaacctcattgctgtcctagccaagtatatctac
cacagacacgacccagctttgccgcgtctggccatccagctgctgaaacgtttggccacg
gtggccccaatgtcagtgtatgcttgcctgggcagtgacgcagctgccattcgtgatgcc
ttcctgacccgccttcagagcaagatcgaggacatgcgcatcaaagtcatgatcctggaa
ttcctcacagttgcagtagagacacaaccaggtctcatcgagctgtttctgaatctagag
gtgaaggatggcagcaatggctccaaggagttcagccttggtgtgtggagctgtctccat
gtggtgctggagctgattgattcccagcagcaagatggatactggtgcccacctctgttg
catcgtgcagctattgccttccttcatgccctgtggcaagaccgtagggacagtgcaatg
cttgtcctcagaaccaaacccaagttttgggagaatttaacaagtccgctgtttggaact
ctctctcctccttcagagacatctgagcccagcatcctcgaaacctgtgccctaatcatg
aagataatatgtttggagatatactatgtagttaagggctcattagaccagtcattaaaa
gatacactcaagaagtttgccagcgagaaacgctttgcctactggtcaggttacgtcaag
tctttggcagtttacatggctgaaacagagggcagcagctgcacgtccttgctagagtat
cagatgctggtgtccgcctggaggatgcttctcatcatcgctaccagtcacgcagacatc
atgcacgtgactgacatggcagttcggcgccagctttttcttgatgtgcttgatgggacc
aaagcattactccttgttgcaacgtcagtgaactgcctccgcctgggctccatgatgtgt
accctgctgctcatcctcctacgccagtggaagagagagctgggtgctgtggataaaatc
cttgggcccttgacagagatcctggaaggggtgctccaggcagaccagcagctcatggaa
aagaccaaggccaaggtgttctctgcattcgtcaccgtgttacagatgaaggagctgcga
gtaagtgatatcccacagtactcccagctggtgctgaacgtctgtgagaccctccaagaa
gaggtgattgcactttttgaccagacccgccacagcctagcatcaggcagtgctgctgag
gacaaggacagcatggagacagatgactgccctcggcctcggcacaaggaccagcgtgat
ggggtgtgtgtcctgggactgcatctggctaaggaattgtgtgaggccgatgaggatggg
gactcatggctgcaggtgacccggaggctccccgttttgcccacgctactcaccaccctg
gagctgagtctccgcatgaagcagaacctgcatttcactgaggctgcgctgcacctgctc
ctcaccctggctcgcacccagcagggagccacagcagtggctggagctggcatcacccag
agcatctgtttgcccctcctgagtgtgtaccagctcagcagcaatggcacaggacaggca
cccagcacctcccgaaagtccctggatgccccgtcctggccaggggtctaccgcctgtcc
atgtccttgatggagcgcttgctcaagactctacgctacaatttcctgactgaggcccta
gactttgtgggtgtccatcaggagcggaccttgcagtgtctcagtgccgtgaggacagta
cagagtctcgcctgcctggaggaagcagatcacactgtgggcttcatcctgcaactgtcc
cacttcaggaaggagtggcacttccatttgcctcagctcatgcgtgatgtccaggtgaac
ctgggttacttgtgccaggcctgtacctccctcctacacagtcgcaagatgctgcagcac
tacctacagaataaaaatggcgatggcctcccttcggctgtcactccccgagttcagcgg
ccatccaccactaccactgttgtggctaccccatctggctgctcctccaagcagcctagt
gctgacactgaggccttggaacagcgagccttacacacagtccagtatggccttcttaag
attctcagcaggaccctggcagccctccgccacttcactccagatgtctgccagatcctc
ctggaccagtccctggatcttgctgaatacaacttcctctttgcgctgagtttcaccact
cccacctttgactctgaagtggccccctccttcggaaccctcttggccaccgtgaatgtg
gccctcaacatgcttggagagctggacaagaaaaaggaatccctcacccaggccgtggga
ctcagcacacaagcagaagggacccgaacattaaagtccctcctgatgttcaccatggag
aactgcttctacctgctcatctcccaagcagtacgctacctcagggacccagctgtgcac
ccccgggacaagcagcggatgaagcaggagctgagctcagagctgagcacgctgctttcc
agcctctcacgatacttcagacggggagcccccagctcccctgctgctggagtcctgccc
tcaccacagggcaaggccacctctctctccaaagccagcccagagtctcaggagcctctg
atccaacttgtgcaagcctttgtccggcacgtgcagagatag
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integrated database retrieval system
