Arvicanthis niloticus (African grass rat): 117703438
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Entry
117703438 CDS
T08817
Symbol
Cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117703438 (Cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117703438 (Cstf3)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117703438 (Cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
117703438
NCBI-ProteinID:
XP_034350932
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Position
2:77036081..77113526
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AA seq
717 aa
AA seq
DB search
MSGDAAAEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK
SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCSASE
LKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPP
GLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIIT
GGAPELAVEGNGPVESSAVLTKAVKRPNEDSDDDEEKGAVVPPVHDIYRARQQKRIR
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggagacgcagccgcggagcaggcagctgaatatgtcccagagaaggtgaagaaa
gcggaaaagaaattagaagaaaatccatatgaccttgatgcttggagcattctcattcga
gaggcacagaatcaacctatagacaaagcacggaagacttacgaacgccttgttgcccag
ttccccagttctggcagattctggaaactgtacattgaagcagagattaaagctaaaaat
tatgacaaggttgaaaaactatttcaaagatgccttatgaaggttttgcacattgattta
tggaagtgttatctttcatacgtcagagaaaccaagggtaaactgccaagttacaaagaa
aaaatggctcaagcttatgactttgcactggataaaattggaatggaaattatgtcctat
cagatttgggtggattacatcaatttcttaaaaggcgtggaagctgtaggatcttatgca
gaaaatcagagaataactgctgtccgaagagtttatcaacgaggttgtgttaatccaatg
atcaacattgaacaactctggagagactacaacaagtatgaagagggtatcaatattcat
ttagctaaaaagatgattgaagatcggagtagagactacatgaatgctagacgtgtagca
aaggaatacgagacagtaatgaaaggtttggatcgcaatgctccttcagtgcctcctcag
aatactcctcaagaagctcagcaagtagacatgtggaagaaatacatccagtgggagaag
agcaaccctcttcgtacagaggaccagaccctgataacgaaaagagttatgtttgcctat
gaacagtgcttacttgtgctgggccatcaccctgatatctggtatgaagctgcccagtat
ctggaacagtcaagtaaactacttgcagaaaagggggatatgaacaatgccaaattattt
agtgatgaagctgctaatatatacgaaagagccataagcactttattaaagaagaacatg
ctcctttattttgcatatgcagattatgaagagagtcgcatgaagtatgagaaggttcac
agtatatataacagacttctggcaattgaggacattgaccccaccttggtatatatccaa
tatatgaaatttgcaaggagagcagaaggtatcaaatctggaagaatgatatttaagaaa
gcaagagaggatgccagaacccgccatcacgtctacgtgactgcagcactcatggagtat
tactgtagtaaggacaaatctgttgcctttaagatttttgaattgggactaaagaaatat
ggagacattccagagtatgttttggcttatattgactatctctctcacctcaatgaggac
aataatactcgagttttgtttgaaagagttttaacatctggaagccttcctcctgagaag
tctggagaaatctgggctcgatttctagcttttgagagtaatattggtgatttagctagt
atactcaaagtggagaaaagacggtttacggcattcagagaagagtatgaaggcaaagaa
acagctttattggtggacagatacaagtttatggatttatacccttgttctgcaagtgaa
ctcaaagcactgggctacaaggatgtctcccgtgctaagctagctgctataattccagac
ccagttgtagctccttccatagtgcctgttctgaaagatgaagtggatagaaaacctgag
taccctaagccagacactcagcagatgattccatttcagccacgacatttagcacctcca
ggcttacacccagtccccggtggagtgtttccagtgcctcctgccgctgttgtgttaatg
aaactgctgcctcctcctatctgcttccagggtccttttgtacaagtggatgaactgatg
gaaattttccgaagatgcaagataccaaacactgttgaggaagccgtgaggatcatcact
ggtggggccccagagctggctgtggaaggcaacggcccagtggaaagtagtgctgtactg
accaaggctgtcaaaaggcccaacgaggactcagacgatgatgaagaaaagggggctgta
gtccccccagttcatgacatttacagagcacggcagcagaaacgaatacgatga
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