Arvicanthis niloticus (African grass rat): 117704154
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Entry
117704154 CDS
T08817
Symbol
Samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03250
Viral life cycle - HIV-1
anu04623
Cytosolic DNA-sensing pathway
anu05170
Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117704154 (Samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
117704154 (Samhd1)
09160 Human Diseases
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
117704154 (Samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anu03400
]
117704154 (Samhd1)
DNA repair and recombination proteins [BR:
anu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
117704154 (Samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
SAM_1
HD
HD_assoc_2
SAM_Ste50p
PDEase_I
DUF4441
Motif
Other DBs
NCBI-GeneID:
117704154
NCBI-ProteinID:
XP_034352058
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All DBs
Position
2:complement(126471015..126506622)
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AA seq
622 aa
AA seq
DB search
MQRATLEQPTKRPRCDDSPRTPQSTPPAGANRPEDPDSQSSDLRTWDPEDVCSFLEKRGF
REKKVLDIFRENKITGSFLPFLDENRLENLGVSSLEERKKMIECIQKLSQSRIDLMKVFN
DPIHGHIEFHPLLIRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLV
RALAEKQPELQISERDMLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPDKKWRHEQGSIE
MFEHLVNSNELKLVMKNYGLVPEEDITFIKEQIMGPPITPVKKSSWLYKGRPAKKSFLYE
IVANKRNGIDVDKWDYFARDCHHLGIQNNFDYQRFVKFARVCEVYDDEEMIWVKHICTRE
KEVGNLYDMFHTRNCLHRRAYQHKIGNLIDIMITEAFLKADPYVEITGTAGKKFRISTAI
DDMEAFTKLTDNIFLEILYSSDPQLSEAQSILRNIECRNLYKYLGETQPKGKKITKEEYE
KLPQEVADAKPDMALDVELKAEDFIVDVINMDYGMEDKNPIDKVHFYCKSNSRQAVTITK
DQVSQLLPEKFAEQLIRVYCKRKDKKSLDAAGQHFIQWCAIRDFTKPQDGDIIAPLITPL
KWNKKTSSSVQEVSRVKMCLKF
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgcagagagcaaccttggagcagccaactaagcggccccgctgcgatgacagcccaagg
acgccacagagcactcctcctgcaggagcgaaccggcctgaagacccggactcccaaagc
agcgacctccgaacctgggatccggaggacgtgtgctccttcctagagaaacgtggtttc
cgagagaagaaagtgctggacatcttcagagagaataaaatcactggttcatttctgccc
tttttggatgagaatcgtcttgaaaatctgggagtaagttccttggaggagaggaagaag
atgatagaatgtatccaaaagctgagtcagtctcggattgatctgatgaaggtatttaat
gatcctattcatggccatattgagttccaccctctccttatccgaatcattgacacacct
cagttccagcggcttcgctacatcaagcagttgggaggcggttactatgttttccctggg
gcgtcacacaatcggtttgaacacagtctcggagtcgggtacctagcagggtgcctcgtt
cgagcacttgccgaaaaacagccagagctgcagatcagtgagagagatatgctctgtgtt
cagattgcggggctctgccatgacctaggtcatgggccattttctcatatgtttgatgga
agatttatcccacttgctcgcccagacaaaaagtggaggcatgaacagggttcgattgag
atgtttgagcatctagttaattctaatgaactcaaacttgtcatgaaaaactatggtctc
gtccctgaagaagatattacctttatcaaggaacaaattatgggaccacctataacacca
gttaaaaagtcttcgtggttatataaaggtcgccctgccaagaagagcttcctttacgag
atagtggctaacaaaagaaatggcatcgatgtggacaaatgggattattttgccagagac
tgtcaccatcttggaatccaaaataattttgattaccagcgctttgttaagtttgcccgt
gtctgtgaagtgtatgacgatgaggagatgatatgggtgaagcacatttgtacgagagaa
aaggaggttggcaatctgtatgacatgttccatacacgcaactgcttacaccgcagagct
tatcaacacaaaatcggcaacctcatcgatatcatgattacagaagccttcctcaaagca
gacccctacgtggagattacagggactgctgggaagaagttccgaatttccacagccatc
gatgatatggaagccttcactaagctgacggataacattttcctggagattttgtactct
tcggatccacagttgtctgaggcccaaagtattttaagaaacattgaatgccgcaatcta
tacaagtatttgggtgagacccagccgaagggtaagaagattacaaaggaagagtatgaa
aagcttccccaagaagttgctgacgccaagcctgacatggccctggacgttgaactgaag
gccgaagatttcatagttgatgttatcaatatggattatgggatggaagacaagaatcca
atcgataaagttcacttctattgtaagagcaacagcaggcaagcggtcacgatcaccaaa
gatcaggtgtcacaactcctgccagagaagtttgcagagcagcttatccgagtgtactgt
aagaggaaagacaagaagagtctggacgcagccgggcagcacttcatccagtggtgtgcg
atcagggacttcaccaagccgcaggatggtgacatcatagccccactcatcacgcctctg
aaatggaataaaaagacttcatcttccgtccaagaagtatccagagtaaaaatgtgtcta
aaattttaa
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