Arvicanthis niloticus (African grass rat): 117704261
Help
Entry
117704261 CDS
T08817
Symbol
Tnrc6a
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117704261 (Tnrc6a)
03036 Chromosome and associated proteins [BR:
anu03036
]
117704261 (Tnrc6a)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117704261 (Tnrc6a)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117704261 (Tnrc6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
117704261
NCBI-ProteinID:
XP_034352245
LinkDB
All DBs
Position
1:90364130..90494324
Genome browser
AA seq
1945 aa
AA seq
DB search
MRELEAKATKDVERNLSRDLVQEEEQLMEEKKKKKDDKKKKEAAQKKATEQKIKVPEQIK
PSVSQPQPANSDNGTSTATSTNNNAKRATASNQQPPPQPQQQQQQQEQQPQALPRYPREV
PPRFRHQEHKQLLKRGQHFPVIAANLGSAVKVLNSQSESSAVANQQPQNNGEVQNSKSQS
DINHNTSGSHYENCQRGPVSSTSDCSTSCKNAVNDLLEKEAWPSAPGSDPELASECIDAD
SASNSESERNITVMASGNTGGEKDGLRNSTGLGSQSKFVVGSSSNNVGHGSSTGPWGFPH
GAIISTCQVSVDAPESKPESSNNRMNAWGTVSSSSNGGLNPSTLNSASNHGAWPVLENNG
LALKGPVGSGSSGINIQCSTIGQMPNNQSINSKVSGSSTHGTWGSLQETCEPEVSGTQKV
SFSGQPQNITTETTGPNNTTNFMTSSLPNSGSVQNNELPTSNPGAWRVSTMNHPQIQAPS
VMNGTSLSHLSNGESKTGGSYGTTWGAYGSNYSGDKCAGPNGQANGDTVNATLMQPGING
PMGTNFQVNTNKGGGVWEPGTVNSQSSPWGSGNGANSGGSRRGWGSPAQNTGTSLSSVEW
NKLPSNQHSNDSANGNGKKLTNGWKSTEEDDQGSATSQTNEQNSVWAKAGGTVESDGSAE
STGRLEEKVTGESQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTE
TSPRGERKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVSGWGDPKPTLRWGDSKG
SNCQGGWEDDSAATGMIKSNQWGNCKEDKSAWNDSQKNKQGWGDGQKSSQGWSVSASDNW
GESSRSNHWGEANKKSSSGGSDSDRSISGWNELGKTSSFTWGNNINPNNSSGWDESSKPT
SSQGWGDPPKCNQSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPATSKPPGTGWLGGPIPA
PTKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNIPEGSSRSDQQA
QMHRLLPAASAVSSKETSSGSGWGEPWAEPSTPATTVDNGTSAWGKPIDSGPSWGEPITA
ASSASTWGSSSVGPQSLSKSGPKSMQDGWCGDEMPLPGSRPTGWDEEEDVEIGMWNSNSS
QELNSSLNWPPYTKKMSSKGLSGKKRRRERGMMKGGNKQEDAWINPFVKQFSNISFSRDS
PEENVQSNKMDLSGGMLQDKRMEIDKHSLNIGDYNRTVGKGPGSRPQISKESSMERNPYF
DKDGIVADESQNMQFMSSQSMKLPPSNSALPNQALGSIAGLGTQNLNSVRQNGNPSMFGV
GNTAAQPRGMQQPPAQPLSSSQPNLRAQVPPPLLSPQVPVSLLKYAPNNGGLNPLFGPQQ
VAMLNQLSQLNQLSQISQLQRLLAQQQRAQSQRSVPSANRQQQDQQGRPLSVQQQMMQQS
RQLDPSLLVKQQTPPSQQPLHQPAMKSFLDNVMPHTTPELQKGPSPVNAFSNFPIGLNSN
LNVNMDMNSIKEPQSRLRKWTTVDSMSVNTSLDQNSSKHGAISSGFRLEESPFVPYDFMN
SSTSPASPPGSIGDGWPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVI
NSLSINTVREVDHLRDRNSGSSSSLNTTLPSTSAWSSIRASNYNVPLSSTAQSTSVARNS
DSKLTWSPGSVTNTSLAHELWKVPLPPKNITAPSRPPPGLTGQKPPLSTWDNSPLRVGGG
WGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHG
NALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGS
SQSRLGSLDCSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWGPPSSSDP
RGISSPSPINAFLSVDHLGGGGESM
NT seq
5838 nt
NT seq
+upstream
nt +downstream
nt
atgagagaattggaagctaaagctaccaaagacgtagagagaaatcttagcagggattta
gtgcaagaagaagaacagttgatggaagaaaagaaaaagaaaaaagacgacaagaaaaag
aaggaagctgctcaaaagaaggccactgaacaaaaaatcaaagtgccagaacagataaag
cccagtgtaagccagcctcagcctgccaactctgataacggcacttccacagcaaccagc
actaataataatgccaagcgagctacagccagcaatcagcagccgccgccgcagccgcag
cagcagcagcagcagcaagagcagcagccacaagccttgcctcggtatccgcgtgaagta
cctccaagatttcgccaccaggaacacaaacagcttctaaagaggggtcagcattttcct
gtcatagcagcaaacttgggatctgctgttaaggtgttaaacagccaatcagaaagcagt
gctgtagcaaatcaacagccacaaaataacggagaggtgcagaacagcaagagccagtca
gatataaatcataatacttcaggatcccattatgaaaattgccagcggggacctgtgtct
tctacaagtgactgtagcacaagctgtaagaatgctgtaaacgacttgttggaaaaagaa
gcatggccctcagcccctggcagtgatcctgagttggcttcagaatgtatagatgctgat
tctgcctccaattctgagtcagagagaaacatcactgtcatggcttcagggaacacaggt
ggtgagaaagatggccttcggaacagcactggacttggttctcaaagcaaatttgtggtt
ggtagcagcagcaataatgtgggccatggaagtagtactggcccgtggggctttccccat
ggagccataataagcacatgtcaggtttctgtggatgctcctgaaagcaaaccagaaagt
agtaacaatagaatgaatgcttggggcactgtaagttcttcatcaaatggagggttaaat
ccaagcactttgaattcagctagcaaccatggtgcctggccagtattagaaaacaatgga
cttgccctaaaagggcctgtagggagtgggagttctggcatcaatattcaatgtagtacc
ataggccagatgcctaacaatcagagtatcaactctaaagtcagtggctcttctacccat
ggtacctggggtagccttcaggaaacttgtgagcctgaagtaagtggtacacagaaggtt
tcattcagtggtcaacctcagaatatcaccactgaaacgactggaccaaataacactact
aactttatgacctctagtttaccaaactccggttcagtacaaaataatgaactgcctact
agtaatccaggggcctggcgtgtgagcacaatgaatcatcctcagatacaggctccgtca
gttatgaatggcacttccctttctcaccttagtaatggagagtcaaaaactggaggctcc
tacggtactacatggggtgcctatggttctaattactctggcgacaaatgtgcaggccct
aatggccaagccaatggtgacactgtgaatgcaactctaatgcagcctggcataaatggg
cctatggggactaactttcaagttaatacaaataaagggggaggtgtatgggagcctggg
acagtgaattcccagagttcaccatggggaagtggaaatggtgcaaattctggaggaagt
cgaagaggatggggaagtcctgcacagaacactggcactagtctatccagtgtggagtgg
aacaaactgcctagcaaccagcattccaatgacagtgcaaatggcaatggtaagaagctt
acaaatggatggaaatctactgaggaagatgatcagggttctgccacatctcagacgaat
gagcaaaacagtgtgtgggccaaagcaggaggcacagtggagagtgatggtagtgcagag
agcactggacgccttgaagagaaggtaaccggggaaagtcagagtagagatagaagaaaa
attgatcagcacacattactccaaagcattgtaaacagaactgacttagatccacgtgtc
ctatccaactctgggtggggacagactcctattaagcagaatactgcctgggatacagag
acatcaccaagaggggaaagaaagactgacaatgggacagaggcctggggaagctctgca
acacagacttttaactcaggggcatgtacagataagactagccctaatagtaatgatacc
tcatctgtatcagggtggggtgatcccaaacctactctgaggtggggagattccaaaggc
tcaaactgccagggggggtgggaagatgattctgctgctacaggaatgatcaagagcaat
cagtgggggaattgcaaagaagacaagtctgcatggaatgattcgcaaaagaacaaacaa
ggctggggtgatggacaaaagtcaagccaaggctggtctgtttctgccagtgataactgg
ggagaatcttccaggagtaaccattggggtgaggctaataagaaatccagctcaggaggc
agtgacagtgacaggtccatttctggttggaacgaacttgggaaaactagttcttttact
tggggaaataatataaatccaaataactcatcaggatgggatgaatcttctaaacctact
tcttcccagggatggggagaccctccaaagtgtaatcagtctctaggttggggagattca
tcaaaaccagttagttctccagattggaacaagcaacaagacattgttggatcatgggga
atcccaccagccaccagcaagcctcctggtacaggctggcttgggggacctattcctgct
ccaacaaaggaggaagaacccacaggctgggaggagccatccccagaatctatacgacga
aaaatggagatcgatgatggaacttcagcttggggagatccaagcaaatacaactacaaa
aatgtgaacatgtggaataaaaacatcccggaaggcagcagccgctcagaccagcaagca
cagatgcaccggctattgccggctgcaagtgccgtctcaagcaaggagaccagcagtggc
tctggctggggtgaaccttgggcagagccttctactccagccacaactgtggataatggt
acttcagcctggggcaagcccatagacagtggtcccagctggggagaacccattactgca
gcatccagtgcatccacatggggctccagctctgttggtccacaatcattaagcaaatct
gggcccaaatctatgcaagatggctggtgtggtgatgagatgccattgcccgggagtcgc
cccacaggctgggatgaggaggaggatgtggagattggaatgtggaacagcaactcatct
caagagcttaactcgtctctaaattggccaccttacaccaagaaaatgtcgtcaaagggt
ctgagtggcaaaaaaaggagaagggaaaggggaatgatgaaaggcggaaacaaacaagag
gacgcgtggataaaccccttcgttaaacagttttcaaatatcagtttttcaagagactca
ccagaagaaaatgtacagagcaataagatggatctttctggaggaatgttacaagacaag
aggatggagattgataaacatagcctgaatattggtgattacaatcgaacggtcgggaaa
ggccctgggtctcggcctcagatttccaaagagtcttccatggagcgcaatccttacttt
gataaggatggcattgtagcagatgaatcccaaaacatgcagtttatgtccagtcaaagc
atgaagcttcccccttcaaatagtgcactacctaaccaggcccttggctccatagcaggg
ctgggtacgcaaaacttgaattctgttagacagaatggcaatcccagtatgtttggtgtt
ggaaacacagcagcacaaccccggggcatgcagcagcctccagcacaacctctcagttca
tctcagcctaatcttcgtgctcaagtgcctcctccattactctcccctcaggttccagtt
tcattgctgaagtatgcaccaaacaacggtggcctgaatccgctctttggccctcaacag
gtagccatgctgaaccagctatcccaactaaaccagctttctcaaatctcccaattacag
cgattgttagcgcagcagcagagggcacagagtcagagaagcgtgccttctgctaaccga
cagcagcaagaccagcagggtcgacctcttagtgtgcagcagcagatgatgcaacagtct
cgtcaacttgatccaagcctgctggtgaagcagcagactccgccttctcagcagccgctc
catcaaccagccatgaagtccttccttgacaatgtcatgccccacactacacccgagctg
cagaaagggccatcgccagtaaatgctttcagcaactttcctataggcttgaactcaaac
ttgaatgtaaatatggatatgaacagtattaaagagccacagtctcgactaaggaagtgg
acaacagtggacagcatgtctgtgaacacgtcgttggatcaaaactccagcaaacatggt
gctatttcaagtggttttaggctggaagagtctccatttgttccctatgactttatgaat
agcagtacttcaccagccagtcctccaggttcaataggagatggctggccacgtgccaaa
tcgcctaacggctctagcagtgttaactggccaccagaatttcgccctggtgaaccatgg
aaaggttatccaaacattgaccctgaaactgacccttacgtcactcctggcagtgtcata
aacagtctttcaattaatactgtgcgggaagttgaccacctcagggacaggaacagtggg
tcatcctcatccttgaacaccacgctgccttcaactagtgcctggtcatccattcgtgcc
tccaactacaatgttcccctcagcagtacagcacaaagcacttcagtagccagaaatagt
gattccaaattgacgtggtctcctggttcagttacaaacacctctctggctcatgagctg
tggaaagtccctttgccacctaaaaacatcactgctccgtcccgcccacctccggggctg
actggtcagaagccacccttgtctacgtgggataattctccccttcgtgtaggtggagga
tggggaaattctgacgccagatataccccaggctccagctggggtgagagcagctcaggg
agaataaccaattggcttgttctgaagaacctcacacctcagattgacggctcaactctg
cgcaccctgtgcatgcagcatggcccactgattacattccatctgaacctcccacatgga
aatgctctggtccgttacagttcaaaagaagaggtagtgaaggcacaaaagtctctgcac
atgtgtgtgctggggaacactactattctcgctgagtttgccagtgaagaggagatcagt
cgcttctttgcacaaagtcagtctctgaccccttctcctggctggcagtctcttgggtcc
agccagagccggctgggctccctcgactgttcccactcattctccagccggactgatctc
aatcactggaatggtgctgggctgtcgggaactaactgtggagaccttcacggcacttcc
ctctgggggaccccacattattccacaagcctgtggggtcccccaagcagcagcgacccc
cggggaattagcagcccatcccccattaatgcttttctttctgttgaccacctgggtggg
ggtggagagtccatgtaa
DBGET
integrated database retrieval system
