Arvicanthis niloticus (African grass rat): 117704660
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Entry
117704660 CDS
T08817
Symbol
Rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
anu03000
]
117704660 (Rc3h2)
04121 Ubiquitin system [BR:
anu04121
]
117704660 (Rc3h2)
Transcription factors [BR:
anu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117704660 (Rc3h2)
Ubiquitin system [BR:
anu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117704660 (Rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf-C3HC4_3
zf-C3HC4
zf_CCCH_4
Prok-RING_4
zf-C3HC4_4
zf-C3HC4_2
DUF4844
Motif
Other DBs
NCBI-GeneID:
117704660
NCBI-ProteinID:
XP_034352762
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All DBs
Position
2:complement(15429144..15481761)
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AA seq
1187 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKMSATVRTFPLLNKVGVNSTVTTTAGNVISVI
GSTETTGKIVPSTNGISNTESSVSPLIPRSTDSAVRTLETVKKVGKVGTNGQNAGPSAES
VSENKIGSPPKTPVSNAAATSAGPSNFGTELNSLPPKSSPFLTRVPVYPQHSESIQYFQD
PRTQIPFEVPQYPQTGYYPPPPTVPAGVTPCVPRFVRSNNVPESSLPPASMPYADHYSTF
SPRDRMNSSPYQPPPPQQYGPVPPVPSGMYAPVYDSRRIWRPAMYQRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSVACQPPNDPRTTVPLPRETCGHLKTSCEEQLRRKPDQ
WAQYHNQKTPVSSTLPVATQSPTPPSPLFSVDFRSDFSESVSGTKFEEDHLSHYSPWSCG
TIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFEAQRRTKEEDPIIPFSDGPII
SKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNDATSSA
HYIERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLDEGR
HLTLNLLSKEIELRNGENDYTEDTVDTKPDRDIELELSALDTDEPDGQSEQIEEILDIQL
GISSQNDQLLNGTAVENGHPVQQHQKDPVKQKRQSLGEDHVILEEQKPILPVTSCFSQPR
PVSISSASCLPITTSVSVGNLILKTHVMSEDKNDFLKPIANGKMVNS
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcaatggacagagtttctgtcctgtccaatctgctataatgaa
tttgatgagaatgtgcacaaacctatcagtttaggttgttcacatacagtttgcaagacc
tgcttgaataaacttcaccgaaaagcgtgtccttttgaccagactgccataaacacagac
attgatgtgctccctgtcaactttgcacttcttcagttagttggagcccaggtaccagat
catcaatcaataaagttaagtaatctaggtgagaataaacactatgaagtggcaaaaaaa
tgtgtagaggatttggcactctacttaaaaccactaagtggaggtaaaggtgtagctagt
ttgaaccagagtgccctgagccgtccaatgcaaaggaaattggttacacttgtaaactgt
caactggtggaggaagaaggtcgtgttagagctatgcgagcggcccgttcactaggagaa
agaactgtgacagagctgatactgcagcaccagaaccctcagcagctgtctgccaacctg
tgggctgctgtcagggctcgaggatgccaatttctagggccagctatgcaagaagaagcc
ttgaagttggtattgctggcattagaagatggttctgctctctctaggaaggttctggta
ctttttgttgtgcaaagattggaaccaagatttcctcaagcatcaaaaacaagtattggc
catgttgtgcagttactgtaccgagcttcttgttttaaggttactaaaagggatgaagac
tcttctctgatgcagctaaaggaggaatttcggagttatgaggcactacgcagagagcat
gatgcgcagattgttcatattgccatggaagcaggactccgtatttcacctgagcagtgg
tcttcactgctgtatggggacttggctcataaatcacacatgcagtctatcattgataag
ctacagtctccagaatcatttgcaaagagtgtacaggaattgacaattgttttgcaacga
acaggtgaccccgctaatttaaatagactgagacctcatttagagcttcttgcaaacata
gaccctaatccagatgctgtttcaccaacttgggagcaactggaaaatgcaatggtagct
gttaaaacagtggttcatggtcttgtggactttatacaaaattatagtagaaaaggccat
gaaacgccccagccgcagccaaacagcaagtataaaactagcatgtgccgagatttacgc
caacaagggggttgtccacgaggaacaaattgtacgtttgcccattctcaggaagaactt
gaaaagtaccgattaaggaacaaaaagatgagcgcgactgtaagaacatttcctcttctg
aataaagttggtgtaaacagcactgtcacaaccacagccggaaatgtcatttctgtcata
ggaagtactgaaacaactgggaaaattgttccaagtacaaatggaatttcaaatacagaa
agcagtgtttccccgctaatcccacgaagcactgacagtgcagtaagaactttggagact
gtgaagaaagtcgggaaggttggcactaacggtcagaatgctggaccctctgcagagtct
gtgtctgaaaataaaattggttctccacccaagactcctgtaagtaatgcagcagctacc
tccgctgggccctctaattttggaacagagctaaattccctgcctcccaaatctagccca
tttttaactagagttccagtatatcctcagcattctgaaagcattcagtattttcaagat
ccaaggactcagataccttttgaagtcccacaatacccacaaacaggatactacccacca
cctccaacggtaccggctggtgtgactccctgtgttcctcgctttgtgaggtccaataat
gttccagaatcctccctcccacctgcttccatgccatatgctgatcattacagtacattc
tcccctcgagatcgaatgaattcttctccttaccaacctcctcctccgcagcagtatgga
ccagttcctccagtaccctctggaatgtatgctcctgtgtatgacagcaggcgcatctgg
cgcccagctatgtaccaacgagatgacataattagaagcaattctttacctcccatggat
gtgatgcactcatctgtctatcagacgtctttgcgggaaagatacaactcattagatgga
tattattcagtggcttgtcagccaccaaatgatccaaggacaactgtgcctttaccaagg
gaaacttgtggtcatttgaagaccagttgtgaggaacagttaagaagaaagccagatcag
tgggcacagtatcataaccagaaaactcctgtctcttcaactcttcctgtggcaacacag
tcaccaacaccaccttctcctctattcagtgtagactttcgatcagatttctctgagagt
gtgagtggcacaaaatttgaggaagaccatctttcccattattctccctggtcttgtggc
accataggctcttgtataaatgccattgattcagagcccaaagatgtaattgctaattca
aatgctgtgctgatggacctggacagtggagatgtaaagagaagagtgcatttatttgaa
gctcagagaaggacaaaagaagaagacccaattattccctttagtgatggacccattatc
tcaaaatggggtgcaatttcccgatcctcccgaacaggttaccatacaacagatcctgtc
caggcaactgcttcccaaggaagtgcaactaagcccatcagtgtatcagattatgtccct
tacgtcaatgctgtcgattcaaggtggagttcatatggtaacgatgccacatcatcagca
cactatattgaacgggacagattcattgttactgatttatctggtcatagaaagcattcc
agtaccggagaccttttgagcattgagcttcagcaggccaagagtaactcattacttctt
cagagggaagctaatgctctggccatgcaacaaaagtggaattccctggatgaaggccgt
caccttactttaaatcttctaagcaaggaaattgaactgagaaatggagagaatgattac
acagaagacactgtagatacaaagcctgatagagatattgagttagagctttcagccctt
gatactgatgaacctgatggccaaagtgaacaaattgaagaaattttggacatacaactt
ggtatcagttctcaaaatgatcagttgctgaatggaacagcagtggaaaatggtcatcca
gtccagcagcaccaaaaggacccagtaaaacagaagagacagagtttaggtgaagaccat
gtgattctggaggagcaaaaaccaattctgccggtaacgtcttgctttagccagccacgc
ccagtgtccattagcagtgcaagctgcctccccatcaccacatctgtcagtgttggcaac
ctcattctgaaaactcacgttatgtctgaagataaaaacgactttttaaaacctattgca
aatgggaagatggttaacagctga
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