Arvicanthis niloticus (African grass rat): 117704821
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Entry
117704821 CDS
T08817
Symbol
Taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117704821 (Taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anu03021
]
117704821 (Taf5)
03036 Chromosome and associated proteins [BR:
anu03036
]
117704821 (Taf5)
Transcription machinery [BR:
anu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117704821 (Taf5)
Coactivators
SAGA/TFTC/STAGA complex
117704821 (Taf5)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
117704821 (Taf5)
STAGA complex
117704821 (Taf5)
TFTC complex
117704821 (Taf5)
SAGA complex
117704821 (Taf5)
SLIK complex
117704821 (Taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_Nup120_160
PEP5_VPS11_N
RAB3GAP2_N
CDK5RAP3
Beta-prop_RIG_1st
eIF2A
Cytochrom_D1
ABM-like
PROPPIN
Motif
Other DBs
NCBI-GeneID:
117704821
NCBI-ProteinID:
XP_034352868
LinkDB
All DBs
Position
1:153469429..153485399
Genome browser
AA seq
800 aa
AA seq
DB search
MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTPNNGPNGGSGNVAVAAAAGGD
GGTPKPVVAVSAAAPAGAAPVPAAPAEAGAPHDRQTLLAVLQFLRQSNLREAEEALRREA
RLLEEAVAGSGAPGELDGAGAEAASALLSRVTASVPGSAGPDPPGAGASVTSVFSGSASG
PVAPGKVANVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
YPLFVHMYLELVYNQHESEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSVGSKSKKQDPN
APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
VHLHFTRRNLVLAAGAYSPQ
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctggcggaggagcagacggaggtggcggtcaagctagagcctgagggaccg
ccgacgctgctacctccgcaggctggcgacggcgcaggcgagggtagcggtggcactcct
aacaacggccccaacggcggcagcgggaatgtggcggtggcggcagcggccggtggggac
ggcgggacccccaagcctgtggtggctgtctctgccgctgccccggcgggggcggccccg
gtgcccgccgctcccgcggaggccggcgctccccacgaccgacagactcttctggctgtg
ctgcagttcctacggcagagcaacctccgcgaggccgaagaggcactgcgccgtgaggcc
cggctgctggaggaggcggtggcgggctccggagctccgggagagttggacggggctggc
gcggaggcggctagcgcgcttctcagccgggtcaccgcttcagttcccggctctgcgggc
cccgaccctccgggggccggcgcttcggtgacctcagtgttctcaggttcagcctcaggt
cctgtggctccaggaaaggttgcaaatgtagctgtggaagaccagccagacgtcagtgct
gtcttgtcggcctacaaccaacaaggagaccctacgatgtatgaagagtactacagtgga
ctgaaacacttcattgaatgttctctggactgccatcgagcagagttatcccaactcttt
tatcctctgtttgtacatatgtacttggagctagtttataatcaacatgaaagtgaagca
aaatcattctttgagaagttccatggagatcaggaatgttattaccaggatgacctacga
gtattatctagtcttaccaaaaaggaacacatgaaagggaatgagaccatgctggacttt
cggacaagtaaatttgttcttcgcatttcccgtgactcgtaccaactcttgaagcggcat
cttcaggagaagcagaacaatcagatatggaacatagttcaggagcacctctacattgac
atctttgatgggatgcctcgcagtaagcaacagatagacgccatggtaggaagcttggca
ggagaagcaaaacgagaagcaaacaaatcaaaggtattttttggtttgttaaaagaacca
gaaatcgaggtgcctttggatgatgaggatgaagaaggggagaatgaagaaggaaaacct
aaaaagaagaagccaaagaaggatagtgttggctctaaaagcaaaaaacaagatcccaat
gccccgcctcaaaacagaatccctcttcctgagttgaaagattcagacaaactggacaaa
ataatgaatatgaaagaaactaccaaacgagtgcgccttgggccagactgtttaccctcc
atttgtttctatacattccttaatgcttaccagggcctcactgcagtggatgtcacggat
gattctagtctgattgctggaggttttgctgattcaactgtcagagtgtggtctgtgacc
cctaaaaagcttcgtagtgtcaaacaagcatcagatcttagtcttatagacaaagaatca
gatgatgtcttagagagaatcatggatgagaaaactgcaagtgagttgaagattttgtat
ggtcacagtgggcctgtctatggagccagcttcagtccggataggaactatctgctctcc
tcttcagaggatggaactgtcaggctctggagccttcagactttcacttgcttggttggg
tataaaggacacaactacccagtatgggacacacagttttctccatatggatattatttc
gtgtcaggaggccatgaccgagtagctcggctttgggctacagatcactatcagccttta
aggatatttgctggccatctcgctgatgtgaattgcactagatttcatccaaattccaac
tatgttgctacgggctctgcagacagaactgtgcggctctgggatgtcctcaacgggaac
tgtgtaaggatcttcactggacacaagggaccaattcattccttgacattttctcccaat
gggagattcctggctacaggagcaacagatggcagagtacttctttgggatattggacat
ggcttgatggttggagaattaaaaggtcacactgatacagtgtgttcacttaggtttagt
agagatggtgaaattttggcatcaggttcaatggataatacagtccggttatgggatgcc
atcaaagcgtttgaagatttagagactgatgactttactacagccactgggcatataaat
ctacctgagaattcccaggagttattattgggtacatatatgaccaaatcgacaccagtt
gtacacctacattttacaagaagaaacttggttctagctgcaggagcttacagtccgcaa
taa
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