Arvicanthis niloticus (African grass rat): 117705018
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Entry
117705018 CDS
T08817
Symbol
Ldb3
Name
(RefSeq) LIM domain-binding protein 3 isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117705018 (Ldb3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
anu04990
]
117705018 (Ldb3)
Domain-containing proteins not elsewhere classified [BR:
anu04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
117705018 (Ldb3)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LIM
DUF4749
PDZ
PDZ_6
LIM_FHL2-3_N
PDZ_2
DUF3854
Motif
Other DBs
NCBI-GeneID:
117705018
NCBI-ProteinID:
XP_034353146
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All DBs
Position
3:complement(86945013..87006811)
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AA seq
734 aa
AA seq
DB search
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTM
THLEAQNKIKSASYNLSLTLQKSKRPIPISTAAPPIQSPLPVIPHQKDPALDTNGSLATP
SPSPEARASPGTPGTLEFGDTFSSSFSQTSVCTPHMETSGPVLPLGSPVAKASSEGAQGS
VSPKVLPGPSQPRQYNNPIGLYSAETLREMAQMYQMSLRGKASGAGLLGGSLPVKDLAVD
SASPVYQAVIKTQSKPEDEADEWARRSSNLQSRSFRILAQMTGTEYMQDPDEEALRRSST
PIEHAPVCTSQATSPLLPASAQPPTAASPVVASPTLATAAAAHAAAASAAGPASSPVENP
RPQASAYSPAAAASPAPSAHTSYSEGPAAPAPKPRVVTTASIRPSVYQPVPASSYSPSPG
ANYSSTPYTPSPAPAYTPSPAPTYTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTP
SAAYSGGPSESASRPPWVTDDSFSQKFAPGKSTTSVSKQTLPRGAPAYNPTGPQVTPLAR
GTFQRAERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFNCAYCKNSLADVCFVEEQ
NNVYCERCYEQFFAPICAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDG
EPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKK
DKPLCKKHAHAINV
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacagtgtgactctgactgggcctgggccctggggcttccgtctgcagggtggc
aaggacttcaatatgcccctcactatctcccggatcactccaggcagcaaggcagcccag
tcccagctcagccaaggagaccttgtggtggccattgatggcgtcaacacagataccatg
acccacctggaggcccagaacaagatcaagtctgccagctacaacctgagcctcactctg
cagaagtccaagcgtcctatccccatctccacagcagcaccccctatccagtccccgctg
ccagtgatcccccaccagaaggaccctgctctggacacgaacggcagcctggcgactccc
agccccagccctgaggcgagggccagcccaggcaccccaggcaccctggagttcggggac
acctttagctcctccttctcccagacctctgtctgcaccccacacatggagacctcgggg
cctgtccttcctctgggcagcccagtggccaaggccagctcagagggtgcacagggctca
gtcagccccaaagttctgccaggccccagccaaccgaggcaatataacaaccccattggc
ctgtactcagcagagacgctgagggagatggctcagatgtatcagatgagcctccgagga
aaggcctcaggtgctggactcctaggagggagcctccctgtgaaagacttggcggtggac
agcgcctctcccgtgtaccaggctgtgatcaaaacccaaagcaagccggaagatgaggct
gatgagtgggcccgccggtcctccaacctgcagtctcgttccttccgcatcctggctcag
atgactgggacagaatacatgcaagaccctgatgaagaagctctgcgaaggtcaagcacc
cctattgagcatgctccagtgtgcaccagccaggctacttccccgctgctgcctgcttct
gcccagccgcccactgctgcctctcccgttgttgcctcgccaaccctggccacagctgct
gccgcccatgctgctgccgcctctgctgcaggccctgcctcaagccccgtggagaatccg
aggccacaggcctctgcttacagtcctgcagctgccgcttctccagcaccctctgcccat
accagctacagcgagggtccagctgcccctgcacccaagcctcgggttgtaaccactgcc
agcatccggccttctgtctatcagccagttcctgcatcttcctacagcccatctccagga
gccaattacagttcgactccctataccccatcaccagctcctgcttataccccctctcct
gctcccacctataccccctctcctgctcccacctataccccctcacccgctcccacatac
tccccttcccctgcaccagcttacaccccctcacctgccccaaactatacccctacacca
tcagctgcctacagtgggggcccttcagaatctgccagccgcccaccctgggtgaccgat
gacagcttctctcagaagtttgctcctggaaagagtaccacctctgtcagcaagcagacc
ctgcccaggggggctccagcctacaacccaacaggcccacaagtgactcctcttgccagg
ggcaccttccagagagctgagcgcttcccagctagcagccggactcccctctgtgggcac
tgtaacaatgtcatcaggggcccttttctggtggccatgggccgctcttggcacccagaa
gagttcaattgtgcctactgcaagaactcccttgcagatgtgtgctttgtggaggagcag
aacaatgtttactgtgaacggtgttacgagcagttttttgccccgatctgtgccaagtgt
aacaccaaaatcatgggggaagtgatgcacgccctgcgacagacatggcataccacttgc
ttcgtctgcgcggcctgcaagaagccctttgggaacagcctcttccacatggaggatgga
gagccatactgtgagaaagactacattaacctgttcagcaccaagtgtcatggatgtgat
tttcctgtggaagctggtgacaagtttatcgaggccctaggccacacctggcatgacacc
tgcttcatttgtgcggtttgccacgtgaatctggaggggcagccgttctactctaagaaa
gacaaacctctgtgcaagaagcatgcgcacgccatcaacgtgtag
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