Arvicanthis niloticus (African grass rat): 117705100
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Entry
117705100 CDS
T08817
Symbol
Chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
117705100 (Chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
anu03036
]
117705100 (Chd8)
Chromosome and associated proteins [BR:
anu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117705100 (Chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
HTH_Hrp3
MUN
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
117705100
NCBI-ProteinID:
XP_034353325
LinkDB
All DBs
Position
3:66306244..66368530
Genome browser
AA seq
2589 aa
AA seq
DB search
MADPIMDLFDDPNLFGLDSLTDDSFNQVTPDPIEEALGLPSSLDSLDQMNQDGGGGDVGN
SSTSDLVPPPEETAPTELPKDSTAPAPESLTLHDYTTQPTNQEQPAQPVLQAPTPTSGLL
QVSKSQEILSQGNPFMGVSATAVSPSNTGGQPSQSAPKIVILKAPPNSSVTGAHVAQIQA
QGITSTAQPLVAGTANGGKVTFTKVLTGTPLRPGVSIVSGNTVLATKVPGNQAAVQRIVQ
PSRPVKQLVLQPVKGSAPAGNPGAPGPPLKPAVTLTSTPTQGESKRITLVLQQPQSGGPQ
GHRHVVLGSLPGKIVLQGNQLAALTQAKNAQGQPAKVVTIQLQVQQPQQKIQIVPQPPSS
QPQPQPPPSAQPLTLSSVQQAQIVGPGQNPGQRLSVPLKMVLQPQAGSSQGASSGLSVVK
VLSASEVAALSSPASCAPHTAGKTGMEENRRLEHQKKQEKANRIVAEAIARARARGEQNI
PRVLNEDELPSVRPEEEGEKKRRKKSSGERLKEEKPKKSKTAAASKAKGKSKLNTITPVV
GKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEE
EVDVTGPIKPEPILPEPVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRVVKKELPSG
QYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFN
PDYVEVDRILDESHSVDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQS
RHPELKRVNRPQANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGL
GKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQ
QYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKL
LDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQK
LQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTN
MPNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDK
LLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDS
DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR
NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDD
EGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKK
ADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESEDDERPRSRRHDRHHT
YGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVETICRAILVYCLLHYRGDENI
KSFIWDLISPAENGKTKELQNHSVFDVSPFPGLSIPVPRGRKGKKVKSQSTFDIHKADWI
RKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKVLGGAIASEIDIWF
PVVDQLEVPTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEH
RVLDNFSDLVEGIDFDKDCEDPEYKPLQGPPKDPDDEGDPLMMMDEEISVIDGDEAQVTQ
QPGHLFWPPGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRRCEAAFKLKEIARR
EKQQRWTRREQTDFYRVVSTFGVEYDPDNMQFHWDRFRTFARLDKKTDESLTKYFHGFVA
MCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRLAL
CQPPGLELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGA
SAASLSRCSTPLLHQQCTSRTASPSPLRPDAPVEKSPEENAVQVPNLESLTLKLEDEVVA
RSRLTPQDYEMRVASSDTAPLSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSS
STDESEDEKEEKLTADRSRPKLYDEESLLSLTMSQDGFPNEDGEQMTPELLLLQERQRAS
EWPKDRVLINRIDLVCQAVLSGKWPANRRSQEMATGGILGPGNHLLDSPSLTPGEYGDSP
VPTPRSSSAASMVEEEASAVTTAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHRLMA
NGVMGDGHPLFHKKKGNRKKLVELEVECMEEPNHLDLDLETRIPVINKVDGTLLVGDEAP
RRAELEMWLQGHPEFAVDPRFLAYMEERRKQKWQRCKKNNKAELNCLGMEPVQTANSRNG
KKGHYAETAFNRVLPGPIAPENSKKRVRRTRPDLSKMMALMQGGSTGSLSLHNTFQHSSS
NLQSVSSLGHSSATSASLPFMPFVMGGAAASPHVDSSTMLHHHHHHPHPHHHHHHHPGLR
TTGYPSSPATTTSGTALRLPTLQHEDDDEEEDEDDDDLSQGYDSSERDFSLIDDPMMPAN
SDSSDDADD
NT seq
7770 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccccatcatggatctgtttgatgacccaaacttatttggcctggactctctg
actgatgacagctttaatcaggtcactccggaccccattgaagaagcgcttggactgcca
agttctctggactccttggatcagatgaaccaagatggtggaggtggtgatgtggggaat
tcatcaacaagtgacctggttcctccaccagaggaaacagctcccactgaacttcccaaa
gactccacagctccagctccagaatccttaaccttgcatgattataccactcagcccacc
aaccaggagcagccagcccaacctgtcttgcaggcaccaacaccaacatcaggacttttg
caggtctctaagagccaggagatcttgagccaagggaatcctttcatgggtgtctctgcc
acagctgtctcccccagtaatactggaggacaaccatctcagtcagctcctaagattgtt
attcttaaagctccaccaaactcttcggtcacaggcgcccatgtggcacaaattcaggcc
caaggtatcaccagtacagctcagcccctagtggctggcacagccaacggtggaaaagtc
acttttaccaaagtgctgactggtacaccccttcgaccaggtgtatccattgtctctggt
aatacagtgttggccacgaaggtccctgggaaccaggctgctgttcagcgcattgtccag
ccaagccgaccagtaaagcagctagtcctccagccagttaagggctcagctcctgctgga
aatcctggggctcctgggcccccactgaagcctgcagttacactgacttctacacctacc
cagggtgaatcgaaacgcatcactttggtccttcaacagccacagtccggaggtccccaa
ggacatcggcatgttgtgttagggagtctaccaggcaagatagtgttacagggcaaccag
ctggcagccttgactcaagccaagaatgcccaggggcagcctgccaaagtagtaactatt
caactgcaggtgcagcagccacagcaaaaaattcagattgtcccccagcctccatcgtca
cagccacagccacagccgccaccctcagcccagccactgaccctgtcctccgtgcagcag
gctcagatagtgggaccaggccaaaacccagggcaaagactttctgtaccgctcaagatg
gtgctgcagccacaggctggctcttctcagggagcctcttctggactctctgtggttaaa
gtcctaagtgccagtgaagtggcagccctgtcatcaccagcaagctgtgcccctcacact
gcagggaagactggaatggaggagaaccgcaggcttgagcaccagaaaaagcaagagaaa
gcaaatcggattgtggcagaggccattgctagagcccgggccaggggtgagcaaaacata
cctcgagtcctgaatgaggatgagctgcctagtgtccggccagaggaggaaggtgaaaag
aaacgcaggaagaagagcagtggagagaggctgaaggaggaaaagccaaagaagagcaag
actgctgctgcctccaaggcgaagggcaagagtaagctaaacaccatcactcctgtagtg
ggcaagaagagaaagcgtaacacctcatctgacaactctgatgtggaagtcatgcctgca
cagtcgccccgggaggacgaagagagcagcatccagaagagacgttcaaaccgccaagtt
aagcgaaaaaaatatacagaggacctggatataaagataacagatgatgaagaggaggag
gaagtcgatgtaactggtccaataaaacccgagcccatcctcccagaaccagtgcaagag
cctgatggcgagactttgccctccatgcagttctttgtggagaatcccagtgaagaagat
gcagctattgtggacaaagtgctttccatgcgagttgtgaagaaagagcttccttctgga
caatatactgaggctgaggaattctttgtcaagtacaagaactactcctatctgcactgt
gaatgggcaaccatctcccagctggagaaggataagaggatccatcagaaactaaagcgg
tttaaaacaaaaatggctcaaatgagacacttctttcatgaagatgaagagcctttcaat
ccagactacgtcgaggtggataggatattggacgagtctcacagtgttgacaaggataat
ggcgagcctgtaatttactacctggtaaaatggtgttctctgccctatgaggacagtacg
tgggagctaaaagaggatgttgatgaaggcaagattcgggaatttaaacggatccagtca
aggcatccagaactcaaaagggtgaatcgtccacaggcaaatgcctggaagaaattggag
ttgtcacatgaatataaaaacagaaaccaattacgggaatatcagttagaaggggtcaac
tggcttctctttaattggtataacaggcagaattgcatcctggctgatgaaatgggatta
ggcaaaactattcagtcaattgccttcttgcaggaggtatataatgtgggcattcatggt
ccctttttggtcattgctccactgtccaccattactaactgggagcgagaattcaatacg
tggacagagatgaacactattgtgtaccatggcagcctggccagccggcagatgattcag
cagtatgaaatgtactgtaaagattcacggggtcgcctcatcccaggtgcgtataagttt
gatgccttgatcaccacttttgagatgattttgtcagactgtcctgagcttcgtgaaatt
gaatggcgttgtgtcatcattgacgaagcccatcggctgaagaaccgtaattgcaagcta
cttgatagtctcaagcacatggacctggaacataaagtattactcacaggaacaccatta
caaaacactgtagaggaactgttcagcctacttcatttcttggaaccttctcagttccct
tcagaatcagaatttcttaaggattttggggatctcaagacagaggagcaggttcagaag
cttcaggccattctaaagccaatgatgctgagaagactcaaagaggatgttgaaaaaaat
ttggctcccaaacaggaaactattattgaagtagagttaaccaacatccagaagaaatac
tacagagctattttagagaagaatttctccttcctttctaaaggggcaggtcataccaat
atgcctaatctactgaacacaatgatggagttacgcaagtgctgcaaccacccatacctc
atcaacggtgcagaagagaaaatcctgatggaatttcgggaagcttgccatatcatacct
caagatttccacctgcaggccatggttcggtcagctggcaaattagttcttattgacaag
ttacttccaaagcttaaagctggtggccataaagttctgatcttctctcagatggtacgc
tgtctagatattctggaggattatctgatccaaaggaggtacttatatgaacgtattgat
gggcgagttagaggcaaccttcgacaagctgctattgaccgatttagcaagcctgactca
gaccgctttgtcttcttgctatgtacccgtgctggtggacttggtattaatcttacagct
gctgatacctgtattatctttgattcagactggaatccacagaatgacctgcaggcccaa
gcacggtgtcatcgaatcggacagagcaaagctgtgaaggtgtaccgactcattactcgt
aactcctatgagagagagatgtttgataaagccagcctcaagttgggattggataaagct
gtgcttcagtccatgagtggtcgggacggcaacattactggaattcaacagttctccaag
aaagagattgaagatctcctaaggaaaggtgcttatgcggccataatggaggaagatgat
gagggttctaagttttgtgaagaggacatagatcagatcttgctgagacggaccacaact
atcactattgagtctgaaggaaaagggtctacttttgccaaggcaagttttgttgcttct
gaaaataggacagatatttccctggatgatccaaacttttggcaaaaatgggccaaaaag
gcagacctagacatggatctgctgaatagtaagaataacttagtgattgacacacctcga
gttcggaaacagactcgacacttcagcactctgaaagatgatgacctggttgagttttct
gatttggaaagtgaagatgatgaacggccacgttcccgaagacatgaccgtcatcacacc
tatgggcgcactgactgctttcgggtagaaaaacatctcctggtatatggttggggacgg
tggagagatattttgtcccatggacgatttaagcgacgcatgactgagagagatgtggag
acaatatgccgtgccatccttgtgtactgtcttctacactaccgtggggatgaaaacatc
aaaagcttcatctgggacttgattagccctgctgaaaatggcaagacaaaagaattgcag
aatcattcagtcttcgatgtctccccttttccaggtctgtctatccctgtgccccgtggg
cgtaaggggaaaaaagtaaagtcacaaagtacttttgacattcataaggcagactggatc
cggaaatacaatcctgatactctgttccaagatgagagttataagaagcatttgaaacat
cagtgtaacaaggttctgttgagagtacggatgctgtactacctgagacaggaggttatt
ggagaccaagcagagaaggtgttagggggtgccatagccagtgagattgacatatggttc
ccagtagtggatcagctggaggttccaacaacatggtgggatagtgaggctgataaatcc
ctgctcattggcgtttttaagcatggctatgagaaatacaataccatgagggcagaccct
gccttgtgcttcctggaaaaggctggcaggccagatgacaaagccattgcagcggaacat
agagtattggataatttctctgacctggtagaagggattgactttgataaggattgtgaa
gatcctgaatataaacccctacagggtcccccaaaggatccagatgatgagggtgatccc
ttgatgatgatggatgaggagatctcagtcattgacggagatgaagcccaggtgactcaa
cagccagggcatttattctggcctccaggctctgccctcacagctagacttcgccgctta
gtaacagcctatcaacgcagctacaagagagaacaaatgaagatagaggctgcagaacgt
ggggaccggagacgccgacgatgtgaagcagcctttaagctcaaagaaatcgcgaggcgg
gaaaaacaacaacgatggacaaggcgtgagcaaactgatttctatcgggtagtgtctacc
tttggcgtagagtatgaccctgacaacatgcagtttcactgggatcgcttccgcactttt
gctcgcctggacaaaaaaacagatgaaagccttaccaagtacttccatggttttgtggcc
atgtgtcgacaagtgtgccgccttcctccagctgctggtgatgaacctccagaccccaat
ctgttcattgagcccatcactgaagagagagcctcacggactctctatcgaattgagttg
cttcgacgcttacgggaacaagttttatgccacccccttttagaagatcggttggcattg
tgtcaacctccaggtcttgaattgcccaaatggtgggaacccgtccgtcatgatggggag
ctcctacgaggagcagcccgccatggggtgagccaaacagactgcaacattatgcaggac
ccagacttctcttttctggctgcccgtatgaattatatgcagaaccatcaggcaggagca
tcagctgcatccctctcacgatgctccactccactgctccaccagcagtgtacctcacgt
actgcttcaccatcacccctgcgcccagatgctcctgttgaaaagtcacctgaggagaat
gctgttcaggtccccaatctggagagtctgactttaaagctagaggatgaagtggtggct
aggagtcgactcaccccacaagactatgaaatgcgtgtagcctcttcagatacagcccct
ctgtcccggagtgttccaccagtcaaactggaggatgaggatgattcagactctgagctg
gacttgagcaagttgtcaccatcctcttcctcttcttcgtcctcatccagctccagctcc
agcactgatgaaagtgaagatgagaaggaagagaagttaactgctgaccggtcccgccca
aagctctatgatgaagagagccttctgtcccttactatgtcccaagatggattcccaaat
gaagatggagaacaaatgacccctgagttgctgctgctgcaggaaagacaaagagcctct
gagtggcccaaggatcgtgttctgataaaccgcattgacctcgtctgccaggctgtactc
tcagggaaatggcctgctaaccggcggagccaggaaatggcaacaggaggaattttgggg
ccaggcaaccatttattagacagtccctctttgaccccaggagaatatggagactctccg
gtgcccacaccacgaagtagcagtgcagcttccatggtagaggaagaagcatctgcagtc
accacagcagcagcccagtttacaaaacttcggcgaggcatggatgagaaagagtttaca
gttcagatcaaagatgaagaaggattgaagttaacattccagaagcatagattgatggct
aatggtgtaatgggagatggacatccactgtttcataagaagaaggggaacaggaaaaag
ctagtagagctggaggtggagtgcatggaagaacctaatcaccttgatctggacctggaa
acccggatccctgtcatcaataaggtggatggtactttgctggtgggtgatgaggcccct
cgacgggcggagctggagatgtggttacagggtcatccagagtttgctgttgatccccga
tttctagcgtatatggaggaacgtagaaaacagaagtggcagagatgtaaaaaaaataat
aaggcagaattgaactgtttgggaatggaaccagtacagacagccaactctagaaatggg
aaaaagggtcactatgctgaaactgcgttcaaccgggttttgccagggcctattgcacca
gagaacagcaagaaacgggtccgcaggacaagaccagacctttctaagatgatggccctg
atgcagggtggaagcactgggtccctatctctgcataacacctttcaacacagcagcagt
aacctacagtctgtgtcctctctgggtcacagcagtgcaacttctgcatctctgcctttt
atgccgtttgtgatgggtggtgcagcagcatcccctcatgtagactccagcaccatgctt
catcatcaccaccaccatccccacccccaccatcaccaccatcaccatccaggcttgaga
accactggatacccttcttcaccagctactaccacctctggtactgccttgcggttacca
acactgcaacatgaggacgatgatgaagaggaggatgaagatgatgatgatttatctcag
ggctatgatagctcagaaagggacttctcactcattgatgaccctatgatgccagccaac
tcagactccagtgatgatgctgacgactga
DBGET
integrated database retrieval system
