KEGG   Arvicanthis niloticus (African grass rat): 117705101
Entry
117705101         CDS       T08817                                 
Symbol
Kdm4b
Name
(RefSeq) lysine-specific demethylase 4B isoform X1
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
anu  Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:anu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:anu03036]
    117705101 (Kdm4b)
Enzymes [BR:anu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     117705101 (Kdm4b)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     117705101 (Kdm4b)
Chromosome and associated proteins [BR:anu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    117705101 (Kdm4b)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD DUF7141 Tudor_3 SLX1_C
Other DBs
NCBI-GeneID: 117705101
NCBI-ProteinID: XP_034353329
LinkDB
Position
3:137280397..137359028
AA seq 1080 aa
MGSEDHSAQNPSCKIMTFRPTMDEFRDFNRYVAYIESQGAHRAGLAKIIPPKEWKPRQTY
DDIDDVVIPAPIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLER
KYWKNLTFVSPIYGADISGSLYDDDVAQWNIGNLRTILDMVERECGTIIEGVNTPYLYFG
MWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAIGFFPGSSQGCDAFLR
HKMTLISPIILKKYGIPFSRITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDY
GKVATQCTCRKDMVKISMDVFVRILQPERYEQWKQGRDLTVLDHTRPTALSSPELSSWSA
SRTSLKAKLLRRQISVKESRPWRKAEEERRREPTRRPGPASHRRRSQPKKSKPEDSRSPG
EVVAGVAGLDEARGCSRGETTPEDEEDEELLPSQGHEAEGLEEDGRGKPRPAKAKSKKKP
PSPLSLPLLSAPPALFPTEEVLRPPPQPKSPGPAMGPMAAERVPPPTPLNVVPPGAPVEE
AEVRPRPIIPMLYVLPRTSNTDGDGGHAAHPQLAPMELGPEEEDQAQASDSQATTPFSKL
KVEIKKSRRHPLGRPPTRSPLSVVKQEASSDEGEDDVNDPEALRSLLSLQWKNKAASFQA
ERKFNAAAAVSEPYCAICTLFYPFSQSVQTERDSAVQPPSKSGQRTRPLIPEMCFTSSGE
NTEPLPANSYVGEDGTSPLISCAHCCLQVHASCYGVRPELAKEGWTCSRCAAHAWTAECC
LCNLRGGALQRTTEHRWIHVICAIAVPEVRFLNVIERNPVDVSAIPEQRWKLKCVYCRKR
MRRVSGACIQCSYEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCLKHRASGAGGQLLRT
VSLGQIVITKNRNGLYYRCRVIGTTAQTFYEVNFDDGSYSDNLYPESITSRDCLRLGPPP
EGELVELRWTDGNLYRARFISTATSLIYQVEFEDGSQLTVKRGDLFTLEEELPKRVRSRL
SLSTGTPQEPGFSGDDVKAAKRPRVATMLATTTEDTGHSPEYLAFMESLLQAQSQPGASF
NT seq 3243 nt   +upstreamnt  +downstreamnt
atggggtctgaggaccacagcgcccagaaccccagctgcaaaatcatgacctttcgcccc
accatggatgaattcagggacttcaacagatatgtggcctacattgagtcacagggtgcc
caccgtgctggcctggccaagatcattccacccaaggagtggaagccacggcagacgtat
gatgacatcgatgacgtggtcatcccagcacctatccagcaggtggtgacgggccagtcg
gggcttttcacgcagtacaacatccagaagaaggccatgactgtgggggagtaccgccgc
ctagccaacagtgagaagtactgtaccccacgccatcaggattttgatgacctggaacgc
aagtactggaagaacctgacctttgtctcacccatctacggggccgacatcagcggctcc
ctgtatgacgatgacgtggcccagtggaacatcggcaatctgagaaccatcctggacatg
gtggagcgcgaatgcgggaccatcattgagggcgtgaatacaccctacttgtactttggc
atgtggaagaccacgtttgcctggcacacagaggacatggacctctacagcatcaactac
ctgcactttggcgagcccaagtcctggtacgccataccgccagagcacggcaagcgcctg
gagcgcctggccataggcttcttccctgggagctcacagggctgtgatgccttcttaagg
cacaagatgacgctcatctcgcccatcatcctgaagaagtatggcatccccttcagccgg
attacccaggaagctggggagttcatgatcacgttcccctatggttaccatgcgggcttc
aaccatggctttaactgcgctgagtccactaacttcgccacgctgcgctggatcgactat
ggcaaggtggctacgcagtgtacgtgtcgaaaggacatggtcaagatctccatggacgtg
tttgtacgcattctgcagcccgaacgctatgagcagtggaagcaaggccgtgacctcaca
gtgctggaccacacgaggcccacggccctgagcagtcctgagctcagctcctggagtgcc
tcacgcacctcactcaaggccaagctcctacgcagacaaattagtgtgaaggagagcaga
ccctggagaaaggctgaggaggagaggaggcgggagccgaccaggaggccagggccggcg
tcacaccggagacggagccagcccaagaagtcaaagcctgaagactccaggtctccgggg
gaagtcgtggctggggtagctggtctggatgaagccaggggctgttcccggggggagacc
acgcctgaggatgaggaggatgaggagctactaccttcacagggccatgaggccgagggc
ttggaagaggatggcagaggcaagcctcggccagctaaggccaagagtaagaagaagcct
cccagcccactgtcactcccattgctgtccgccccgccagccctgttccccaccgaggag
gtcctgaggccaccaccccaacccaagtctccagggccagccatgggccccatggctgca
gagcgggttcctccgccaacaccgctcaacgtcgtgcctcctggggcgccagttgaggaa
gcggaggtgcggccacggcccattatcccaatgctgtacgtgctgccccgcaccagcaac
actgatggggacgggggacatgctgcccacccacagttggcacccatggagctagggcca
gaagaggaagaccaagcccaggctagtgactcacaggcaacaacccccttctctaagctg
aaggtggagatcaaaaagagccggcgtcacccgttgggtcggccccctactcggtcccct
ctgtctgtggtcaagcaagaggcctcaagtgatgaaggagaggatgatgtcaacgatcct
gaggccttgagatccctgctgtccctgcagtggaagaacaaggcagccagcttccaagct
gagaggaagttcaatgcagccgccgccgtcagcgagccctactgtgccatctgtaccctc
ttctaccccttcagccagtcagtacagacagagcgggacagtgctgtccagccgccctcc
aaaagtggccagaggacacggccactgatacctgagatgtgcttcacttcaagtggggag
aacacagagccactgcctgccaactcctatgtcggggaggacggcaccagcccgctcatc
tcctgtgcccactgctgcctgcaggtccatgccagttgctatggtgtccggcctgagctg
gccaaagagggctggacatgttctcggtgtgcggcccacgcctggactgcggaatgctgt
ttgtgcaacctgcgggggggagccctacagaggaccacagagcacaggtggattcatgtg
atctgcgccattgcagtcccggaggtgcgattcctcaatgtgattgaacgcaacccagtg
gacgtcagtgccatccctgagcaacggtggaaactgaaatgtgtgtactgccgcaagcgg
atgagaagggtgtcgggcgcctgcattcagtgctcctatgaacactgctccacatcgttc
catgtgacctgcgcgcatgctgctggcgtcctcatggagcccgatgactggccctacgtg
gtgtccatcacctgcctcaagcacagggccagtggagcagggggccagctcttgcgcacg
gtgtccctgggtcagattgttatcaccaagaatcgcaacgggctctactaccgctgccgt
gtcattggcaccaccgcgcagacattctatgaggtcaacttcgacgatggttcttatagc
gacaacctgtacccagagagcatcacgagcagagactgcctgcggctagggccgccccct
gagggtgagctggtggaactacggtggacggacggtaatctgtacagagccaggttcatc
tccacggctaccagccttatctaccaggtagagtttgaggatgggtcccagctgactgtg
aaacgtggggacctcttcacactggaagaggagctgcccaagagggtgcggtcccggctg
tcactgagcaccggcacaccacaggagcctggcttctccggagatgatgtgaaagccgcc
aagcgcccacgggtggccaccatgctggccaccaccactgaggacacagggcatagccca
gaatacctggccttcatggagagcttgctgcaggcgcagagccagcctggagcatccttc
tag

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