Arvicanthis niloticus (African grass rat): 117705223
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Entry
117705223 CDS
T08817
Symbol
Pcdh9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117705223 (Pcdh9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
anu01009
]
117705223 (Pcdh9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
anu04515
]
117705223 (Pcdh9)
Protein phosphatases and associated proteins [BR:
anu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117705223 (Pcdh9)
Cell adhesion molecules [BR:
anu04515
]
Cadherins
Protocadherins
117705223 (Pcdh9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Big_9
V_ATPase_I
MAP17
RCR
EphA2_TM
DUF6249
7tm_3
Motif
Other DBs
NCBI-GeneID:
117705223
NCBI-ProteinID:
XP_034353491
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All DBs
Position
3:28001989..28830164
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AA seq
1203 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSSTGEIFTTANRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFNREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDED
AGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKALHTLVLVFLYVNDTAGN
TSYIYDLIRRTMETPLDRNIGDSGQTYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD
GPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWIKKDKLV
NGHTLTRAWKEDTNRNQFNDRKQYGTNEGHFNNGSHMTDIPLANLKSYKQAGGTIESPKE
HQL
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggctgctctcattgcctgtttaaggctggattcc
gcaatagctcaagaacttatttacactattagagaggaactgcctgaaaatgtacccata
ggaaatataccaaaggatctgaatatttctcacatcaatgctgccacagggaccagtgcc
agccttgtctacagactggtttctaaagctggcgatgcccctctagtgaaagtatccagt
agcactggggagatcttcaccactgccaacagaatagacagagagaaactctgtgccgga
gcttcttacgctgaggagaatgagtgcttctttgaacttgaggtggtgatcctcccaaat
gactttttcaggctgatcaaaatcaagatcattgtcaaggataccaatgataatgccccc
atgtttccatctcctgtcatcaatatttccatcccggagaacactttgatcaacagccgc
tttccaatcccatcagccacagaccctgatacaggcttcaatggggtacagcattatgaa
ttgctaaatggacagagtgtttttggactggatatcgtggaaactccggagggagaaaag
tggccacaattgattgttcagcagaacttggatagagaacaaaaagatacctatgtgatg
aaaatcaaagtggaggatgggggcactccacagaaatccagcacggccatactgcaggtc
acagtaagtgatgtcaatgacaacaggccagtgtttaaagagggtcaagtagaagtgcat
attccagagaatgctcctgtgggaacctctgtaattcagctccatgctactgatgcagac
ataggcagtaatgctgaaatccggtacatttttggtgcccaggtggcccctgcaaccaaa
agactctttgctttaaataacacaactgggctgattacagttcagaggtccttagatagg
gaggagacagccattcacaaagtgacagtgctggctagtgatggcagctccactcctgcc
agagccactgttaccatcaatgtcacagatgtaaatgataaccctccgaacatagacctc
aggtacattataagtcccatcaatggtacagtgtatctctctgagaaagatccagtcaat
acaaagattgccctaattacagtttcagataaggacacggatgtgaatggcaaagtgatc
tgttttattgaaagagaggtcccatttcatctgaaggcagtatatgacaaccaatatctg
ctagagacctcatctctgctggactacgagggcaccaaagaattcagctttaaaatcgtt
gcctctgattctgggaagcccagtttgaatcagactgccctggtaagggttaagcttgag
gatgaaaatgacaacccaccaattttcaaccagcctgtaattgagctgtcagtttctgaa
aacaaccgacgtgggttatacttaacaactattagtgctacagatgaagacagtgggaaa
aatgcagacattgtttatcagcttggaccgaatgcctccttctttgatctggacagaaag
acaggagttttgacagcctccagagtctttaacagagaggaacaagagcggttcattttt
acagtaactgccagggacaatgggacccctcccctccagagccaagcagcagtgatagtg
actgttctggatgagaacgacaatagccccaagtttactcataatcattttcagtttttt
gtgtctgagaatctgccaaagtatagtactgtgggggtgatcacggtgacagacgaagat
gctggagagaataaagctgtgactctttccattttaaatgacaatgaaaattttgtgttg
gatccctattcgggtgtcataaagtccaatgtctcctttgatagagagcagcagagttcc
tacacttttgatgtcaaagccactgacggaggacagccacctcggtcctctactgcaaaa
gtaactatcaatgtcatggatgtcaatgacaatagtccagttgtcatttcgccaccatcc
aacacctcctttaagttggtgcccctctcagccattcctggttctgtggttgctgaagtt
tttgcggtggatattgacaccggaatgaatgcagaacttaagtataccatagtaagtggg
aacaacaaaggattatttcggattgatccagtaacgggcaatatcaccttagaagagaag
ccagcacctactgacgtgggcctgcaccgtctcgtggtcaacataagtgacttggggtac
cctaaggctttgcacactcttgtgctggtgtttctttacgtgaacgacactgctggaaac
acctcgtatatatatgacttgatccgtaggactatggagaccccgctggacaggaacata
ggagacagtggtcaaacttatcaaaatgaggactatctcaccatcatgattgccattgtt
gctggggccatggtggtcatcgttgttatctttgtcacggtgctggtgcgctgtcgccat
gcctcgaggttcaaggccgctcagaggagcaaacaaggtgctgaatggatgtctccaaac
caggagaataaacaaaacaagaaaaagaaacggaagaaaagaaagtcgcccaagagttct
cttttgaactttgttactatcgaagagtccaaacccgatgatgcagttcatgaacctatc
aatgggaccataagcctgcctgccgagctggaagaacagagtataggaagatttgactgg
ggcccagctcctccaacaaccttcaagcctaacagccctgacctggccaagcactacaaa
tctgcctctccacagcctgcttttcatctcaaaccagacactccagtttccgtgaaaaag
caccacgtcattcaagagctccctttggacaacacctttgttgggggctgtgacaccctt
tccaaacgctcctccactagttcagatcacttcagtgcctcagagtgcagctcccaagga
ggcttcaagacaaagggccccttacacaccagacagtctcagcgccgtgttacctttcac
ctcccggatggctcccaggaaagctgcagtgacagtggtctgggagaccacgagccggtg
ggtagtggaaccctgatctcacaccctcttcctctggttcagccacaggacgaattctac
gaccaggcctctccggacaagaggaccgaagcagatggcaactcggaccccaattctgat
ggacctctgggtccccgagggttagctgaagctacagagatgtgcactcaagagtgtctg
gttttgggtcactctgataattgctggatgcctcctggcttgggtccataccaacaccct
aaatctcctctgtcaacctttgcaccccagaaagaatggatcaagaaagacaagcttgtg
aatgggcacaccctgacaagagcttggaaagaagacaccaacaggaaccaattcaatgac
cgtaagcagtatggcaccaatgaaggccatttcaacaatggcagccacatgacagacatt
cctctggcaaatctgaagtcctataagcaagcaggaggcacgattgagagtcctaaggag
caccaactttaa
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integrated database retrieval system
