Arvicanthis niloticus (African grass rat): 117705801
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Entry
117705801 CDS
T08817
Symbol
Atxn2l
Name
(RefSeq) ataxin-2-like protein isoform X1
KO
K23625
ataxin 2/2L
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu05014
Amyotrophic lateral sclerosis
anu05017
Spinocerebellar ataxia
anu05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
117705801 (Atxn2l)
05017 Spinocerebellar ataxia
117705801 (Atxn2l)
05022 Pathways of neurodegeneration - multiple diseases
117705801 (Atxn2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117705801 (Atxn2l)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117705801 (Atxn2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
DUF5415
Motif
Other DBs
NCBI-GeneID:
117705801
NCBI-ProteinID:
XP_034354383
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All DBs
Position
1:complement(93583733..93595178)
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AA seq
1103 aa
AA seq
DB search
MLKPQPPQQTSQPQQPPPTQQAVARRPPGGTSPPNGGLPGPLPATAAPPGPPAAVSPCLG
PAAAAGSGLRRGAESILAAPAPPQHQERPGAVAIGSVRGQTTGKGPPQSPVFEGVYNNSR
MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIVDT
MVFKPSDVLLVHFRNVDFNYATKDKFTDSAIAMNSKVNGEHKEKVLQRWEGGDSNSDDYD
LESDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQLARE
IESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLVSREGKYIPLPQRVREGPRG
GVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRGAKTL
SSPNSRPSGEASVPPTSAALSFFSVGRMYPPRSPKSAAPAPVSASCPEPPIGSAVVSSAS
IPVTSSVVDPGAGSISPASPKLSLAPTDVKELPTKEPSRSLEAQELARIAGKVPGLQNEQ
KRFQLEELRKFGAQFKLQPPSSSPETGLDPFPSRILKEEAKGKEKEVDGLLTSDPMGSPV
SSKTESILDKEDKVPLAAVGGTEGPEQLPPPCPSQTGSPPVGLIKGDDKEEGPVTEQVKK
STLNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYIPQ
IHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAAG
PPLVAATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIV
SSSTPQYPSAEQPTPQALYATVHQSYPHHATQLHGHQPQPATTPTGSQPQSQHAAPSPVQ
HQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQLP
HGFTNMAHVTQAHVQTGVTAAPPPHPGAPHPPQVMLLHPPQGHGGPPQGAVPPSGVPALS
ASTPSPYPYIGHPQGEQPGQAPGFPGGADDRILCRVGRSHSRRRQGLAPGSVLCFPPSSL
SCDPAAPLPTASPALSDPDCLLT
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagcctcagccgccacaacagacctcccagccacagcagccgccccccacgcaa
caggccgtggctcgccggcctcccggcgggaccagccctcccaacggcggcctcccggga
ccgctgcccgccaccgcggctcccccggggcctcccgcagcggtctctccgtgcctgggg
cctgcagccgctgccggcagcgggctccgtcgcggagccgaaagcatcttggcggcgcca
gcgccgccgcagcatcaagaacggccaggggcagtggctatcggcagcgtcagaggacag
accaccggaaagggacccccacagtcacccgtgtttgaaggtgtctataacaattccagg
atgctgcatttcctgacagctgtagtgggttctacttgtgatgtaaaggtgaaaaatggc
accacttacgagggcattttcaagactctgagctcaaagtttgaactggcagtagacgca
gtacatcgaaaagcatctgagccagcaggtgggcctcggcgagaagacattgtggacact
atggtgtttaaaccaagtgatgttctgcttgttcacttccgaaatgttgacttcaattat
gctacgaaagacaagttcactgactcagccattgccatgaactctaaggtgaatggagag
cacaaagagaaggtgcttcaacgttgggagggtggtgacagcaacagtgacgactatgat
ctggaatccgatatgtccaatggatgggatcccaatgagatgttcaaatttaatgaggag
aactatggcgtgaagaccacctatgacagcagtctatcctcttacacggttcccttagaa
aaggacaactctgaagagtttcggcagcgggaacttcgagcggctcagttggctcgagag
attgagtctagtccccaataccgtctacggattgccatggaaaatgacgatgggcgaaca
gaggaggagaagcacagtgcagttcagcggcaggggtctgggcgggagagccccagcttg
gtatccagggaggggaagtatatccctctgcctcaacgagttcgggaaggtccccgggga
ggagttcgatgtagcagttctcgaggaggacggcctggccttagctctttgccacctcgt
ggccctcaccatcttgacaatagcagtcctggccctgggtctgaggcacgcggtatcaat
ggaggtccttcccgaatgtcccccaaggcacagcggcccctgagaggtgccaagacttta
tcttcacccaacagtaggccttctggagaagcttctgttccaccaacatctgcagctctc
tcttttttttcagtgggccgaatgtaccctccacggtctcccaagtctgctgcccccgcc
ccagtctcagcttcctgtcctgagccccccattggttcagcagtggtgtcctctgcctct
atccctgtgacatcatcagttgtggatcctggagccggctctatttcccccgcatctccg
aaactctccctggctcctacagatgtaaaagaactcccaaccaaggagcccagtaggagt
ttggaagcccaagagctggcccgcatagctgggaaagtccctggccttcagaatgaacaa
aaacgatttcagttggaagaactgaggaaatttggagcccaatttaagcttcaacctcct
agtagctcccctgagacgggcctggatccatttccttcccggatcttaaaagaagaggcc
aaaggaaaggagaaagaggtggatggtctattgacttcagatcccatgggatccccagtc
tcctccaagacagaatccatattggataaggaagacaaagtgcccttggcagcagtaggg
ggtactgaggggccagagcagctcccaccaccttgccccagccaaactggcagtcctcca
gtgggcctcatcaagggagatgacaaagaggagggccctgttactgaacaagtaaagaag
tctacattgaaccccaatgccaaggagttcaatccaacaaagcctctgctgtctgtgaac
aaatctaccagtactccaacttcaccagggccccgtactcattcaacaccttctatcccg
gtgctgacagcaggccaaagtgggctctacagtccccagtacatctcatatatacctcag
atccacatgggaccagctgtacaggcacctcagatgtatccatatcctgtatccaattcg
gtgcctgggcagcagggcaagtaccggggtgcaaaaggctcacttcccccccagcgctct
gaccaacatcaaccagcctcagcccctccgatgatgcaggctgctgctgctgctgctggc
ccacctctggtggctgccacaccttactcctcctacatcccctacaatccacagcagttc
ccaggccagcctgcaatgatgcaacccatggcacactacccttcacagccggtgttcgcc
cctatgcttcaaagtaatccgagaatgttgacatcgggaagccatccccaggctatcgtg
tcatcctccactcctcagtacccttctgcagagcagcctaccccccaagccctctatgcc
actgttcaccagtcctatccacaccatgccacgcagctccatggccaccagccgcagcca
gccaccacacctactgggagccagccacaatcccagcatgcggcccccagtcccgttcag
caccaggcggggcaggccccacacctgggcagtggacagccacagcagaatctgtaccat
ccaggggccctaacaggcacgccaccttctctaccaccgggaccttctgcccagtctcct
caaagcagcttcccccagccagctgctgtgtatgccatccatccccaccagcagctgcca
cacggcttcaccaacatggcccatgttacccaggcccatgtccaaactggagtcacagca
gccccgcccccacaccctggggctccccacccgccccaggtgatgctgctgcaccccccc
cagggccatgggggccccccccaaggcgcggtgcccccgagtggggtgcctgcactctca
gcttccacaccctcaccctacccctacatcggacacccccaaggtgagcagcctggccag
gcgcctggatttccaggaggagccgatgacaggattctatgtagggtgggcagaagccac
agtcgccgccgccaggggcttgctcctggctctgtcctttgcttccctccgtcctcgctc
agttgtgatccagcagcccccctccccactgcctccccagctctcagtgaccccgactgt
ctcctgacttag
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