Arvicanthis niloticus (African grass rat): 117706034
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Entry
117706034 CDS
T08817
Symbol
Pms1
Name
(RefSeq) PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anu03400
]
117706034 (Pms1)
DNA repair and recombination proteins [BR:
anu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
117706034 (Pms1)
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Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
117706034
NCBI-ProteinID:
XP_034354739
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All DBs
Position
3:complement(134502036..134597066)
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AA seq
923 aa
AA seq
DB search
MKQLPAATVRLLSSSQTITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEIRDNGEG
IKAVDVPVMAVKYYTSKINSHEDLEHLTTYGFRGEALGSICNVAEVVVTTRTAADDFSTQ
YVLDGSGHILSQKPSHLGQGTTVTALKLFKNLPVRKQFYSTAKKCKDELKNVQDLLISYG
VLKPDIRIIFVHNKAVIWQKSRVPDHRTALMSVLGTAVMGNMKSVEQHCEESQIYLSGFF
PKHDADHNSTSLSTPERSFIFINSRPVHQKDILKLIRRYYNLKCLKESTRLYPIFFLKID
VPSAEVDINLTPDKSQVLLQNKESVLIALENLMMTCYGPLPTTESYENNRVDVSAANMVV
SETAETDVLFNKIESSGNNYPNADTSATHFQKDESRKNTDHHLSKQINIGYHCDGRFSGE
HSHINKDTFQNIPMSHLSSEANQSKHSETQSVGPIEHIQGENGRDGIGGSAGDGREALPE
KALEMCADDWSKGNVFNSMGENIEPVKILVPQKSLSGKVTNSHPSHEPENLSDGPCSKTS
NVIDNKSGQLTAYDLISNRAVKKPMSASAMFIQDHRAQFLTENPKTGLEDATAQIKARWE
TLSEEEKHKYEEKAKKDLERYNNQMKKAIEQETQVPLKDNRKKLRATGAWGWTQKHKVKD
SSNQSKLDELFQSQNEKKKKKSENIKITEIPFSMENLKANFKKQKEVDLEEKDEICLIHS
LKFPDAWLVTSRADVMLLNPYRVEEALIFKRLLENHKLLAEPLEKPIILTESLLNGSHYL
DVLHKMSTVEARCSGSAYLCDPRLTANGFKIRLTPGVSSAENYLEIEGMAKCLPFYGIMD
LKEILNAIINKNAKELYECRPRKVINYLEGEAVRLSRQLPMYLPQEDVQDLIYRMKHQFG
KEIKGCVHGRPFFHHLTHLPGTS
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaattgcctgcagcgacagttcgcctcctgtccagttctcagacaatcacttca
gtggtcagtgttgtgaaagagctcatagaaaactccttggatgcaggagctaccagcatc
gatgttaaactggagaattatggatttgataaaattgagattcgggacaatggtgagggc
atcaaggctgtagatgtaccagtgatggcagtgaagtactacacctcgaagatcaacagt
catgaagaccttgaacatctgacaacctatggttttcgtggtgaagccttggggtcaata
tgtaatgttgcagaggttgtagttacaacaaggacagctgctgatgactttagcacccag
tatgttttagatggcagtggccacatactttctcagaagccttcacatcttggtcaaggt
acaactgtaactgctctaaagttgtttaagaatctacctgtaagaaagcaattttactca
acagctaaaaagtgtaaagatgagctaaaaaatgtacaggatcttctcataagctacggt
gtcctgaaacctgacataaggattatttttgtacataataaggcagttatttggcagaaa
agtagagttccagatcacaggacggctctgatgtcggttctgggaactgctgtcatgggc
aacatgaaatctgtggagcagcactgtgaagaatctcagatttacctaagtggatttttt
ccaaagcatgatgcagaccacaattctacaagtctttcaaccccagaacgaagcttcatc
tttattaatagtcgaccagtacatcaaaaagatatactaaagttaatccgacgctattat
aatctgaagtgcttaaaggaatctactcgcttgtatcccattttctttctgaaaattgat
gttccatcagctgaggtggatataaatctaacaccagataaaagtcaagtgttattacag
aataaggaatctgttttaattgctcttgaaaatctgatgatgacctgttacggaccacta
cccactacagagtcttatgaaaataacagagtagatgtttccgcagccaacatggttgtt
agtgaaacagcagaaacagatgtgctttttaataaaatagagtcatctggaaataattat
ccaaatgctgatacttcggctactcacttccaaaaggatgaatctagaaaaaacactgat
catcatttaagtaaacagataaatataggctatcactgtgatggtcgtttcagtggtgaa
cattctcatattaataaggacacatttcaaaatatccctatgagtcatttatcctcagag
gctaatcagagtaaacatagtgagactcagtctgtaggtcccattgagcacatccaagga
gaaaatggcagggatggtataggagggagtgcgggagacgggagagaagcacttcctgag
aaagctctggaaatgtgtgccgatgactggagcaagggaaatgtgtttaattcgatggga
gagaatatcgaacctgtgaaaattttagtgccacaaaagagcttatcaggtaaagtgact
aatagtcacccaagccatgaaccagagaatctcagtgatggtccttgtagcaaaacctca
aatgtaatcgataacaaatctggacagcttacagcctatgacttaattagcaatcgagca
gtcaaaaagcccatgtcagctagtgccatgttcattcaagaccaccgcgctcagttcctc
acagagaatcccaagactggtttggaggatgcaacagcacaaattaaagcacgatgggag
acactgagtgaagaggaaaaacacaaatatgaggaaaaggctaaaaaagacttggaacga
tacaataaccagatgaagaaagctattgaacaagagacacaagtaccattaaaagacaac
aggaaaaagttaagggccacgggtgcatggggctggacacagaaacataaggtgaaagac
tcatctaatcagtcaaaacttgatgagctctttcagtcccagaatgaaaagaagaagaag
aagagtgaaaatattaaaataacagagattccattttctatggaaaacttaaaagcgaac
tttaagaaacaaaaggaagttgacttagaggagaaggatgagatttgcttgatccacagt
ctcaagtttcctgatgcatggctggtcacatccagagcagatgtcatgttactgaacccg
tacagagtggaggaagccctgatatttaaaagacttcttgagaatcataaactccttgca
gaaccattggaaaagccaattatattaacagagagtcttttaaacggttctcattattta
gatgtcttacataaaatgtccacagttgaggcaagatgcagtggatcagcttacctgtgt
gaccctcgtctcacagcaaatggcttcaagatcagattgacaccaggagtttccagtgct
gagaactacttggaaatagaaggaatggctaagtgtctcccattctatggaataatggat
ttaaaggaaattcttaatgctataataaacaaaaatgcaaaggagctttatgaatgtaga
cctcgaaaagtgataaattatctggagggagaagccgtccgtctatctagacagctaccc
atgtacttaccacaagaggatgtccaagatcttatctatagaatgaagcaccagttcgga
aaagaaatcaaagggtgtgtgcatggtcgacccttttttcatcatttgacccatcttcca
ggaacttcatga
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